Hi,
I try to setup a new galaxy env by following the wiki (used nginx, uwsgi) Everything is actually working but if I try to add the grid engine, my jobs will not be fired...
I already found this post and try to adept it.. but well it did not helped. http://dev.list.galaxyproject.org/quot-This-job-is-waiting-to-run-quot-td466...
The grid engine it self runs. Is there any way to observe on the fly what actually happens. All I see are just that the galaxy server started. Currently I have no clue how I can solve this problem.
Here is my job_conf
<job_conf> <plugins workers="2"> <plugin id="gridengine" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"> <param id="drmaa_library_path">/opt/sge/lib/lx-amd64/libdrmaa.so</param> </plugin> <!-- <plugin id="torque" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"> <param id="drmaa_library_path">/usr/lib/pbs-drmaa/lib/libdrmaa.so</param> </plugin> <plugin id="slurm" type="runner" load="galaxy.jobs.runners.slurm:SlurmJobRunner"> <param id="drmaa_library_path">/usr/lib/slurm-drmaa/lib/libdrmaa.so</param> </plugin> --> </plugins> <handlers default="handlers"> <handler id="handler0" tags="handlers"/> <handler id="handler1" tags="handlers"/> </handlers> <destinations default="cluster"> <destination id="cluster" runner="gridengine"/> <!-- <destination id="cluster" runner="torque"/> <destination id="cluster" runner="slurm"/> --> </destinations> <limits> </limits> </job_conf>
best
vipul