Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
*apt-key adv --keyserver keyserver.ubuntu.com http://keyserver.ubuntu.com --recv-keys E084DAB9* *echo 'deb http://cran.r-project.org/bin/linux/ubuntu http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list* *apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev* *apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev* *apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl* *apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev * *pip install distribute --upgrade* *pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2* *pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas*
However, clicking the *visualize* icon no iPython and RStudio are visible. Galaxy is in my home folder installed */home/lorencm/galaxy.*
What am I missing?
Thank you in advance.
Mic