Hi Daniel,
Thanks for the answer. How can I update my Galaxy instance with this fix? The fix is on galaxy-central repository and I've cloned the galaxy-dist repository.
Thanks a lot,
Alexandre
2015-01-14 18:29 GMT-02:00 Daniel Blankenberg dan@bx.psu.edu:
Hi Alexandre,
Thanks for reporting this issue. We have committed a fix here https://bitbucket.org/galaxy/galaxy-central/commits/7fd6061e43d5/ and it will be applied to additional releases soon. Please let know if you encounter additional issues.
Thanks for using Galaxy,
Dan
On Jan 14, 2015, at 1:40 PM, Alexandre Defelicibus adefelicibus@gmail.com wrote:
Hi all,
I've updated a Galaxy server with the latest stable distribution "latest_2015.01.13" and now a I got an error:
cannot open galaxy.tools.wrappers.DatasetFilenameWrapper: No such file
The tool has a multiple select field:
<param name="input_pdbs" type="data" multiple="true" format="pdb" label="PDB Files" />
On the job details, the select files on the multiple select (there are on my history already), are showed at the Job command line as follow: python /home/alexandre/mestrado/protpred-galaxy/galaxy-dist/tools/analysis/dominance_ranking.py -i [<galaxy.tools.wrappers.DatasetFilenameWrapper object at 0x7f4e1a653290>, <galaxy.tools.wrappers.DatasetFilenameWrapper object at 0x7f4e1a653bd0>, <galaxy.tools.wrappers.DatasetFilenameWrapper object at 0x7f4e1a653d90>, <galaxy.tools.wrappers.DatasetFilenameWrapper object at 0x7f4e1a61de10>]
The command on XML is:
<command interpreter="python"> dominance_ranking.py -i $input_pdbs </command>
This tool was working fine before the update.
Any ideas what Is going wrong?
Thanks a lot, Alexandre
-- Alexandre Defelicibus Mestrando em Bioengenharia Programa de Pós-Graduação em Bioengenharia Universidade de São Paulo - USP ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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