Hello everyone,
I am trying to set up a local Galaxy instance publicly available and configured via pbs/torque in order to fully exploit a multi-cpu server.
So I changed my job_conf.xml and my galaxy.ini files (described in the end of the e-mail) according to the istructions on the Galaxy site but when I tried to run the run.sh script:
GALAXY_RUN_ALL=1 sh run.sh --daemon
all the handlers start from 127.0.0.1 instead of 0.0.0.0.
Has anyone encountered that issue before. Am I missing something?
Thank you, Makis
The changes in the files:
galaxy.ini
[uwsgi] processes = 12 stats = 0.0.0.0:9191 # i had this at 127.0.0.1:9191 but with no difference socket = 0.0.0.0:4001 # I had this at 127.0.0.1:4001 but with no difference pythonpath = lib threads = 4 logto = /home/galaxy/uwsgi.log master = True
[server:handler0] use = egg:Paste#http port = 8090 use_threadpool = True threadpool_workers = 10
[server:handler1] use = egg:Paste#http port = 8091 use_threadpool = True threadpool_workers = 10
[server:handler2] use = egg:Paste#http port = 8092 use_threadpool = True threadpool_workers = 10
[server:handler3] use = egg:Paste#http port = 8093 use_threadpool = True threadpool_workers = 10
[server:handler4] use = egg:Paste#http port = 8094 use_threadpool = True threadpool_workers = 10
[server:handler5] use = egg:Paste#http port = 8095 use_threadpool = True threadpool_workers = 10
# The port on which to listen. #port = 8090
# The address on which to listen. By default, only listen to localhost (Galaxy # will not be accessible over the network). Use '0.0.0.0' to listen on all # available network interfaces. host = 0.0.0.0
job_conf.xml <?xml version="1.0"?> <job_conf> <plugins workers="16"> <!-- "workers" is the number of threads for the runner's work queue. The default from <plugins> is used if not defined for a <plugin>. --> <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="16"/> </plugins> <handlers default="handlers"> <!-- Additional job handlers - the id should match the name of a [server:<id>] in galaxy.ini. --> <handler id="handler0" tags="handlers"/> <handler id="handler1" tags="handlers"/> <handler id="handler2" tags="handlers"/> <handler id="handler3" tags="handlers"/> <handler id="handler4" tags="handlers"/> <handler id="handler5" tags="handlers"/>
</handlers> <destinations default="torque"> <!-- Destinations define details about remote resources and how jobs should be executed on those remote resources.
--> <destination id="torque" runner="pbs"/> <destination id="other_cluster" runner="pbs"> <param id="destination">@other.cluster</param> </destination> <destination id="long_jobs" runner="pbs"> <param id="Resource_List">walltime=72:00:00, nodes=1:ppn=8</param> <param id="-p">128</param> </destination> </destinations>