Dear all,
I've been trying to properly install the "BAMTools split" tool in our local DKFZ-Galaxy instance, but it doesn't work properly.
The strange thing is that you can launch a bamtools splitter job on our cluster, but it never shows up in the history...until it fails with following
"error":
"tool error
An error occurred with this dataset: Unable to finish job"
All versions (Galaxy, bamtools 2.4.0,samtools 1.3.1) are up to date and this is what I installed:
Repository bamtools_split Name: bamtools_split Owner: devteam Synopsis: Tool for splitting BAM files Detailed description: Utility for splitting BAM files. It is based on BAMtools suite of tools by Derek Barnett. Content homepage: https://github.com/pezmaster31/bamtools
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/...
Revision: 2:e2c1b62e1db1
Thanks and best regards,
Christopher