It's been a while since I've had to setup a Galaxy instance and scramble the pbs_python egg, but I have installed pbs_python by hand for a different project recently and discovered there are some issues with pbs_python and TORQUE 4.2+ -- I think the symptom was different though. If I remember right it would compile successfully but would give undefined symbol errors when the Python module is loaded, so my information won't be too much help to you since you can't even get it to compile now but once you get past that you will face the same problem I did. It turned out that there were several internal functions that were being included in libtorque that were being wrapped by pbs_python but were no longer available in newer versions of lib torque (what I think really happened is TORQUE switched from gcc to g++ for compilation and "public" API functions got wrapped in extern "C" {} so their names didn't get mangled. I was able to remove these from pbs_python and recompile and reinstall it to eliminate the undefined symbol errors.
I've opened a ticket with the pbs_python developer: https://oss.trac.surfsara.nl/pbs_python/ticket/34 this lists the functions that you need to remove from pbs_wrap.c and pbs.py (somewhere I made a note of the exact line numbers that need to be removed)
-- Glen L. Beane Software Engineer III The Jackson Laboratory (207) 288-6153
From: Frost Mitchell <frost.b.mitchell@gmail.commailto:frost.b.mitchell@gmail.com> Date: Thursday, July 11, 2013 7:38 PM To: "galaxy-dev@bx.psu.edumailto:galaxy-dev@bx.psu.edu" <galaxy-dev@bx.psu.edumailto:galaxy-dev@bx.psu.edu> Subject: [galaxy-dev] pbs_python Scramble Continues to Fail
Hi. We are attempting to set up a Galaxy instance on our local TORQUE cluster, but the Documentation instructions to scramble as such:
LIBTORQUE_DIR=/path/to/libtorque python scripts/scramble.py -e pbs_python
Gives the following barrage of output:
(galaxy_env)[root@galaxy galaxy-dist]# LIBTORQUE_DIR=/rc/tools/free/redhat_6_x86_64/torque-4.2.2/lib/ python scripts/scramble.py -e pbs_python --config=universe_wsgi.ini fetch_one(): Using existing source, remove to download again: /rc/galaxy/galaxy-dist/scripts/scramble/archives/pbs_python-4.1.0.tar.gz unpack_source(): Removing old build directory at: /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python unpack_source(): Unpacked to: /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python copy_build_script(): Using build script /rc/galaxy/galaxy-dist/scripts/scramble/scripts/pbs_python.py run_scramble_script(): Beginning build run_scramble_script(): Executing in /rc/galaxy/galaxy-dist/scripts/scramble/build/py2.6-linux-x86_64-ucs4/pbs_python: /rc/galaxy/tools/galaxy_env/bin/python scramble.py checking for pbs-config... /rc/tools/free/redhat_6_x86_64/torque-4.2.2/lib//../bin/pbs-config Found torque version: 4.2.2 checking for python... /rc/galaxy/tools/galaxy_env/bin/python checking for python version... 2.6 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.6/site-packages checking for python extension module directory... ${exec_prefix}/lib64/python2.6/site-packages configure: creating ./config.status config.status: creating Makefile config.status: creating setup.py scramble(): Patching setup.py running egg_info creating src/pbs_python.egg-info writing src/pbs_python.egg-info/PKG-INFO writing top-level names to src/pbs_python.egg-info/top_level.txt writing dependency_links to src/pbs_python.egg-info/dependency_links.txt writing manifest file 'src/pbs_python.egg-info/SOURCES.txt' reading manifest file 'src/pbs_python.egg-info/SOURCES.txt' writing manifest file 'src/pbs_python.egg-info/SOURCES.txt' running bdist_egg installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib.linux-x86_64-2.6 copying src/pbs.py -> build/lib.linux-x86_64-2.6 copying src/PBSQuery.py -> build/lib.linux-x86_64-2.6 running build_ext building '_pbs' extension creating build/temp.linux-x86_64-2.6 creating build/temp.linux-x86_64-2.6/src gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DTORQUE_OLD -I/usr/include/python2.6 -c src/pbs_wrap.c -o build/temp.linux-x86_64-2.6/src/pbs_wrap.o src/pbs_wrap.c:124:20: error: Python.h: No such file or directory src/pbs_wrap.c:730: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:785: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:806: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c: In function ‘SWIG_Python_AddErrorMsg’: src/pbs_wrap.c:853: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:853: error: (Each undeclared identifier is reported only once src/pbs_wrap.c:853: error: for each function it appears in.) src/pbs_wrap.c:853: error: ‘type’ undeclared (first use in this function) src/pbs_wrap.c:854: error: ‘value’ undeclared (first use in this function) src/pbs_wrap.c:855: error: ‘traceback’ undeclared (first use in this function) src/pbs_wrap.c:857: warning: implicit declaration of function ‘PyErr_Occurred’ src/pbs_wrap.c:857: warning: implicit declaration of function ‘PyErr_Fetch’ src/pbs_wrap.c:859: error: ‘old_str’ undeclared (first use in this function) src/pbs_wrap.c:859: warning: implicit declaration of function ‘PyObject_Str’ src/pbs_wrap.c:860: warning: implicit declaration of function ‘PyErr_Clear’ src/pbs_wrap.c:861: warning: implicit declaration of function ‘Py_XINCREF’ src/pbs_wrap.c:862: warning: implicit declaration of function ‘PyErr_Format’ src/pbs_wrap.c:862: warning: implicit declaration of function ‘PyString_AsString’ src/pbs_wrap.c:863: warning: implicit declaration of function ‘Py_DECREF’ src/pbs_wrap.c:866: warning: implicit declaration of function ‘PyErr_SetString’ src/pbs_wrap.c:866: error: ‘PyExc_RuntimeError’ undeclared (first use in this function) src/pbs_wrap.c: At top level: src/pbs_wrap.c:1034: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1042: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1053: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1060: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1106: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1208: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1219: error: expected specifier-qualifier-list before ‘PyObject’ src/pbs_wrap.c: In function ‘SWIG_Python_CheckImplicit’: src/pbs_wrap.c:1231: error: ‘PySwigClientData’ has no member named ‘implicitconv’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:1234: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1243: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘PySwigClientData_Del’: src/pbs_wrap.c:1298: warning: implicit declaration of function ‘Py_XDECREF’ src/pbs_wrap.c:1298: error: ‘PySwigClientData’ has no member named ‘newraw’ src/pbs_wrap.c:1299: error: ‘PySwigClientData’ has no member named ‘newargs’ src/pbs_wrap.c:1300: error: ‘PySwigClientData’ has no member named ‘destroy’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:1306: error: expected specifier-qualifier-list before ‘PyObject_HEAD’ src/pbs_wrap.c:1313: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1319: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1337: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1343: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1349: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1372: error: expected declaration specifiers or ‘...’ before ‘FILE’ src/pbs_wrap.c: In function ‘PySwigObject_print’: src/pbs_wrap.c:1377: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:1377: error: ‘repr’ undeclared (first use in this function) src/pbs_wrap.c:1377: warning: implicit declaration of function ‘PySwigObject_repr’ src/pbs_wrap.c:1380: warning: implicit declaration of function ‘fputs’ src/pbs_wrap.c:1380: error: ‘fp’ undeclared (first use in this function) src/pbs_wrap.c: At top level: src/pbs_wrap.c:1388: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c: In function ‘PySwigObject_compare’: src/pbs_wrap.c:1399: error: ‘PySwigObject’ has no member named ‘ptr’ src/pbs_wrap.c:1400: error: ‘PySwigObject’ has no member named ‘ptr’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:1404: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1406: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1413: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1418: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1422: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1456: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1473: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1489: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1501: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1513: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1561: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘swigobject_methods’ src/pbs_wrap.c:1573: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1580: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1688: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1706: error: expected specifier-qualifier-list before ‘PyObject_HEAD’ src/pbs_wrap.c:1713: error: expected declaration specifiers or ‘...’ before ‘FILE’ src/pbs_wrap.c: In function ‘PySwigPacked_print’: src/pbs_wrap.c:1716: error: ‘fp’ undeclared (first use in this function) src/pbs_wrap.c:1717: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1717: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1721: error: ‘PySwigPacked’ has no member named ‘ty’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:1726: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1737: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c: In function ‘PySwigPacked_compare’: src/pbs_wrap.c:1751: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1752: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: warning: left-hand operand of comma expression has no effect src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘pack’ src/pbs_wrap.c:1754: error: ‘PySwigPacked’ has no member named ‘size’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:1757: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1759: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1766: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1772: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1781: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1851: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1871: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1887: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1893: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:1903: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1954: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:1969: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2060: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2092: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2114: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2178: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2199: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2217: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2238: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c: In function ‘SWIG_Python_GetModule’: src/pbs_wrap.c:2259: warning: implicit declaration of function ‘PyCObject_Import’ src/pbs_wrap.c:2260: warning: assignment makes pointer from integer without a cast src/pbs_wrap.c: At top level: src/pbs_wrap.c:2274: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘SWIG_Python_DestroyModule’: src/pbs_wrap.c:2315: warning: implicit declaration of function ‘SWIG_This’ src/pbs_wrap.c: In function ‘SWIG_Python_SetModule’: src/pbs_wrap.c:2320: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘swig_empty_runtime_method_table’ src/pbs_wrap.c:2320: error: ‘swig_empty_runtime_method_table’ undeclared (first use in this function) src/pbs_wrap.c:2320: error: expected expression before ‘]’ token src/pbs_wrap.c:2322: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:2322: error: ‘module’ undeclared (first use in this function) src/pbs_wrap.c:2322: warning: implicit declaration of function ‘Py_InitModule’ src/pbs_wrap.c:2324: error: ‘pointer’ undeclared (first use in this function) src/pbs_wrap.c:2324: warning: implicit declaration of function ‘PyCObject_FromVoidPtr’ src/pbs_wrap.c:2326: warning: implicit declaration of function ‘PyModule_AddObject’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:2333: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c: In function ‘SWIG_Python_TypeQuery’: src/pbs_wrap.c:2342: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:2342: error: ‘cache’ undeclared (first use in this function) src/pbs_wrap.c:2342: warning: implicit declaration of function ‘SWIG_Python_TypeCache’ src/pbs_wrap.c:2343: error: ‘key’ undeclared (first use in this function) src/pbs_wrap.c:2343: warning: implicit declaration of function ‘PyString_FromString’ src/pbs_wrap.c:2344: error: ‘obj’ undeclared (first use in this function) src/pbs_wrap.c:2344: warning: implicit declaration of function ‘PyDict_GetItem’ src/pbs_wrap.c:2347: warning: implicit declaration of function ‘PyCObject_AsVoidPtr’ src/pbs_wrap.c:2353: warning: implicit declaration of function ‘PyDict_SetItem’ src/pbs_wrap.c: In function ‘SWIG_Python_AddErrMesg’: src/pbs_wrap.c:2372: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:2372: error: ‘type’ undeclared (first use in this function) src/pbs_wrap.c:2373: error: ‘value’ undeclared (first use in this function) src/pbs_wrap.c:2374: error: ‘traceback’ undeclared (first use in this function) src/pbs_wrap.c:2377: error: ‘old_str’ undeclared (first use in this function) src/pbs_wrap.c: In function ‘SWIG_Python_ArgFail’: src/pbs_wrap.c:2399: warning: implicit declaration of function ‘snprintf’ src/pbs_wrap.c:2399: warning: incompatible implicit declaration of built-in function ‘snprintf’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:2407: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2415: error: expected declaration specifiers or ‘...’ before ‘PyObject’ src/pbs_wrap.c: In function ‘SWIG_Python_TypeError’: src/pbs_wrap.c:2429: error: ‘obj’ undeclared (first use in this function) src/pbs_wrap.c:2431: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:2431: error: ‘str’ undeclared (first use in this function) src/pbs_wrap.c:2434: error: ‘PyExc_TypeError’ undeclared (first use in this function) src/pbs_wrap.c: At top level: src/pbs_wrap.c:2453: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2499:4: error: #error "This python version requires swig to be run with the '-classic' option" src/pbs_wrap.c:2530: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘get_error’: src/pbs_wrap.c:2636: warning: implicit declaration of function ‘printf’ src/pbs_wrap.c:2636: warning: incompatible implicit declaration of built-in function ‘printf’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:2656: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘SWIG_CanCastAsInteger’: src/pbs_wrap.c:2712: error: ‘errno’ undeclared (first use in this function) src/pbs_wrap.c:2712: error: ‘EDOM’ undeclared (first use in this function) src/pbs_wrap.c:2712: error: ‘ERANGE’ undeclared (first use in this function) src/pbs_wrap.c: At top level: src/pbs_wrap.c:2736: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2775: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2793: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2813: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2830: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:2838: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘attrl___str__’: src/pbs_wrap.c:2893: warning: incompatible implicit declaration of built-in function ‘snprintf’ src/pbs_wrap.c: In function ‘delete_attrl’: src/pbs_wrap.c:2900: warning: incompatible implicit declaration of built-in function ‘printf’ src/pbs_wrap.c: In function ‘attropl___str__’: src/pbs_wrap.c:2908: warning: incompatible implicit declaration of built-in function ‘snprintf’ src/pbs_wrap.c: In function ‘delete_attropl’: src/pbs_wrap.c:2915: warning: incompatible implicit declaration of built-in function ‘printf’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:2923: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2967: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:2983: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:3008: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3055: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3100: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3146: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3159: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3189: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3236: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3275: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3297: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3336: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3358: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3397: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3419: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3449: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3471: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3493: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3514: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3521: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3551: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3596: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3635: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3657: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3696: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3718: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3757: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3779: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3809: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3831: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3853: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3874: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3881: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3911: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:3966: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4005: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4027: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4057: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4104: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4143: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4165: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4172: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:4187: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4195: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:4215: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4223: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4257: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4315: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4413: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4438: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4451: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4464: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4510: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4532: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4554: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4612: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4658: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4774: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4832: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4899: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:4957: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5066: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5148: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5179: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5225: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5283: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5341: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5454: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5512: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5578: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5709: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5828: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:5959: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6078: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6209: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6319: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6362: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6393: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6424: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6458: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6480: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6502: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6536: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6570: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6595: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6617: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6630: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6643: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6664: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:6679: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6687: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:6702: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6710: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6731: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6776: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6830: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6867: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6921: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6942: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6955: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:6968: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:6980: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7053: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7078: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:7098: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7106: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘SwigMethods’ src/pbs_wrap.c:7503: error: expected specifier-qualifier-list before ‘PyObject’ src/pbs_wrap.c:7509: error: expected specifier-qualifier-list before ‘PyObject_HEAD’ src/pbs_wrap.c:7513: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7518: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7531: error: expected declaration specifiers or ‘...’ before ‘FILE’ src/pbs_wrap.c: In function ‘swig_varlink_print’: src/pbs_wrap.c:7532: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:7532: error: ‘str’ undeclared (first use in this function) src/pbs_wrap.c:7532: warning: implicit declaration of function ‘swig_varlink_str’ src/pbs_wrap.c:7533: warning: implicit declaration of function ‘fprintf’ src/pbs_wrap.c:7533: warning: incompatible implicit declaration of built-in function ‘fprintf’ src/pbs_wrap.c:7533: error: ‘fp’ undeclared (first use in this function) src/pbs_wrap.c: In function ‘swig_varlink_dealloc’: src/pbs_wrap.c:7541: error: ‘swig_varlinkobject’ has no member named ‘vars’ src/pbs_wrap.c:7543: error: ‘swig_globalvar’ has no member named ‘next’ src/pbs_wrap.c:7544: warning: implicit declaration of function ‘free’ src/pbs_wrap.c:7544: warning: incompatible implicit declaration of built-in function ‘free’ src/pbs_wrap.c: At top level: src/pbs_wrap.c:7550: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7568: error: expected declaration specifiers or ‘...’ before ‘PyObject’ src/pbs_wrap.c: In function ‘swig_varlink_setattr’: src/pbs_wrap.c:7570: error: ‘swig_varlinkobject’ has no member named ‘vars’ src/pbs_wrap.c:7573: error: ‘swig_globalvar’ has no member named ‘set_attr’ src/pbs_wrap.c:7573: error: ‘p’ undeclared (first use in this function) src/pbs_wrap.c:7576: error: ‘swig_globalvar’ has no member named ‘next’ src/pbs_wrap.c:7579: error: ‘PyExc_NameError’ undeclared (first use in this function) src/pbs_wrap.c: At top level: src/pbs_wrap.c:7584: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7636: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7646: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:7662: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token src/pbs_wrap.c:7675: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c:7702: error: expected ‘)’ before ‘*’ token src/pbs_wrap.c: In function ‘init_pbs’: src/pbs_wrap.c:7755: error: ‘PyObject’ undeclared (first use in this function) src/pbs_wrap.c:7755: error: ‘m’ undeclared (first use in this function) src/pbs_wrap.c:7755: error: ‘d’ undeclared (first use in this function) src/pbs_wrap.c:7755: warning: left-hand operand of comma expression has no effect src/pbs_wrap.c:7758: warning: implicit declaration of function ‘SWIG_Python_FixMethods’ src/pbs_wrap.c:7758: error: ‘SwigMethods’ undeclared (first use in this function) src/pbs_wrap.c:7761: warning: implicit declaration of function ‘PyModule_GetDict’ src/pbs_wrap.c:7764: warning: implicit declaration of function ‘SWIG_Python_InstallConstants’ src/pbs_wrap.c:7767: warning: implicit declaration of function ‘SWIG_Python_SetConstant’ src/pbs_wrap.c:7767: warning: implicit declaration of function ‘SWIG_FromCharPtr’ src/pbs_wrap.c:7966: warning: implicit declaration of function ‘SWIG_From_int’ src/pbs_wrap.c:8036: warning: implicit declaration of function ‘PyDict_SetItemString’ src/pbs_wrap.c:8036: warning: implicit declaration of function ‘SWIG_globals’ src/pbs_wrap.c:8037: warning: implicit declaration of function ‘SWIG_Python_addvarlink’ src/pbs_wrap.c:8037: error: ‘Swig_var_pbs_errno_get’ undeclared (first use in this function) src/pbs_wrap.c:8037: error: ‘Swig_var_pbs_errno_set’ undeclared (first use in this function) src/pbs_wrap.c:8038: error: ‘Swig_var_pbs_server_get’ undeclared (first use in this function) src/pbs_wrap.c:8038: error: ‘Swig_var_pbs_server_set’ undeclared (first use in this function) src/pbs_wrap.c:8048: error: ‘Swig_var_log_event_mask_get’ undeclared (first use in this function) src/pbs_wrap.c:8048: error: ‘Swig_var_log_event_mask_set’ undeclared (first use in this function) src/pbs_wrap.c:8049: error: ‘Swig_var_chk_file_sec_stderr_get’ undeclared (first use in this function) src/pbs_wrap.c:8049: error: ‘Swig_var_chk_file_sec_stderr_set’ undeclared (first use in this function) src/pbs_wrap.c:8050: error: ‘Swig_var_log_buffer_get’ undeclared (first use in this function) src/pbs_wrap.c:8050: error: ‘Swig_var_log_buffer_set’ undeclared (first use in this function) src/pbs_wrap.c:8073: error: ‘Swig_var_msg_daemonname_get’ undeclared (first use in this function) src/pbs_wrap.c:8073: error: ‘Swig_var_msg_daemonname_set’ undeclared (first use in this function) error: command 'gcc' failed with exit status 1 Traceback (most recent call last): File "scripts/scramble.py", line 50, in <module> egg.scramble() File "/rc/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 57, in scramble self.run_scramble_script() File "/rc/galaxy/galaxy-dist/lib/galaxy/eggs/scramble.py", line 206, in run_scramble_script raise ScrambleFailure( self, "%s(): Egg build failed for %s %s" % ( sys._getframe().f_code.co_name, self.namehttp://self.name, self.version ) ) galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for pbs_python 4.1.0
Any tips or tricks for a fix would be much appreciated. If it's the only alternative, we could run jobs through DRMAA, though from what I have been reading plenty of issues arise with that as well.
Thanks,
Frost Mitchell Department of Research Computing Utah State University
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