Re: [galaxy-dev] output name

On Wed, Sep 22, 2010 at 10:56 AM, Andreu Alibés aalibes@gmail.com wrote:

Hi,

I'm trying to add to Galaxy a tool that, basically, it runs this way

mytool inputfile -outputname=result -outputformat=zzz

This would output a file called result.zzz

How do I catch the result.zzz file? Because

<outputs>    <data format="zzz" name="output" /> </outputs>

will look for a file called output, but not a file called output.zzz

Thanks,

Andreu

I'd be interested to know if you can solve this within Galaxy as I can think of situations where it would be handy.

If not, you could write your own wrapper script which renames the output file to something consistent.

Peter