On Wed, Sep 22, 2010 at 10:56 AM, Andreu Alibés <aalibes(a)gmail.com&gt; wrote: > Hi, > > I'm trying to add to Galaxy a tool that, basically, it runs this way > > mytool inputfile -outputname=result -outputformat=zzz > > This would output a file called result.zzz > > How do I catch the result.zzz file? Because > > <outputs> > <data format="zzz" name="output" /> > </outputs> > > will look for a file called output, but not a file called output.zzz > > Thanks, > > Andreu I'd be interested to know if you can solve this within Galaxy as I can think of situations where it would be handy. If not, you could write your own wrapper script which renames the output file to something consistent. Peter