9 Jan
2012
9 Jan
'12
10:03 p.m.
Hi all - I think there is a problem with the Picard HSMetrics wrapper in Galaxy. The wrapper accepts a BAM files and a BED file. However the BED file isn't really in a BED format...it requires a SAM header before the BED lines. This really isn't a BED file format. I'm not quite sure how Galaxy should deal with this...maybe a file format specific for Picard formatted BED file.