Hi Nate,
I try it with a script for galaxy service, but it did not work. I successfully did it with one daemon file for each process...
regards.
2011/8/26 Nate Coraor nate@bx.psu.edu
Hi Iry,
By default, PasteScript is looking for a section named [server:main].
With this config, you can start the servers with:
% sh run.sh --server-name=web0 % sh run.sh --server-name=web1 % sh run.sh --server-name=web2
--nate
Iry Witham wrote:
I have performed a new install of Galaxy for development and deployment
purposes. However, when I run the run.sh script I get the following error:
Traceback (most recent call last): File "./scripts/paster.py", line 34, in <module> command.run() File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 84, in run
invoke(command, command_name, options, args[1:])File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 123, in invoke
exit_code = runner.run(args)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 218, in run
result = self.command()File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 274, in command
relative_to=base, global_conf=vars)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 308, in loadserver
relative_to=relative_to, **kw)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 210, in loadserver
return loadobj(SERVER, uri, name=name, **kw)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 224, in loadobj
global_conf=global_conf)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 248, in loadcontext
global_conf=global_conf)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 278, in _loadconfig
return loader.get_context(object_type, name, global_conf)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 363, in get_context
object_type, name=name)File
"/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 528, in find_config_section
self.filename))LookupError: No section 'main' (prefixed by 'server') found in config
/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/universe_wsgi.ini
I have modified the universe_wsgi.ini to reflect the way our production
server is configured. The following is the server section of that file:
# # Galaxy is configured by default to be useable in a single-user
development
# environment. To tune the application for a multi-user production # environment, see the documentation at: # #
http://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer
#
# Throughout this sample configuration file, except where stated
otherwise,
# uncommented values override the default if left unset, whereas
commented
# values are set to the default value. # examples of many of these options are explained in more detail in the
wiki:
# # Config hackers are encouraged to check there before asking for help.
# ---- HTTP Server
# Configuration of the internal HTTP server.
[server:web0] use = egg:Paste#http port = 8080 host = 0.0.0.0 use_threadpool = true threadpool_workers = 7
# Configuration of web server 2 [server:web1] use = egg:Paste#http port = 8081 host = 0.0.0.0 use_threadpool = true threadpool_workers = 7
# Configuration of web server 3 [server:web2] use = egg:Paste#http port = 8082 host = 0.0.0.0 use_threadpool = true threadpool_workers = 7
# The internal HTTP server to use. Currently only Paste is provided.
This
# option is required. #use = egg:Paste#http
# The port on which to listen. #port = 8080
# The address on which to listen. By default, only listen to localhost
(Galaxy
# will not be accessible over the network). Use '0.0.0.0' to listen on
all
# available network interfaces. #host = 0.0.0.0
# Use a threadpool for the web server instead of creating a thread for
each
# request. #use_threadpool = True
# Number of threads in the web server thread pool. #threadpool_workers = 5
# ---- Filters
# Filters sit between Galaxy and the HTTP server.
# These filters are disabled by default. They can be enabled with # 'filter-with' in the [app:main] section below.
# Define the gzip filter. [filter:gzip] use = egg:Paste#gzip
# Define the proxy-prefix filter. [filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy
My production server works fine, but this one will not run. What am I
missing?
Thanks, Iry
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