dwgsim (and dwgsimeval) may be useful to you:
http://toolshed.g2.bx.psu.edu/view/nilshomer/dwgsim http://toolshed.g2.bx.psu.edu/view/nilshomer/dwgsim_eval
Good luck, J.
On Jun 24, 2013, at 11:47 PM, מירב . wrote:
Hi,
I want to do some checks on tools I'm using(in this case I'm checking svdetect). I have a program that creats .fasta file of genome with some structural variants. Now I need a tool wich will simulate the illumina's sequencing read and output .fastq files(or .sam files). Does galaxy have such tool? If not, do you have suggestion for something out of galaxy?
Thanks for your help
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