I am trying to upload BAM files (by pasting a URL) to my history(or
DataLibrary) and get the following error. These are bam files which I had
previously uploaded with no problems.
Traceback (most recent call last):
line 126, in run_job
job_wrapper.finish( stdout, stderr )
File "/doolittle/Galaxy/galaxy_dist/lib/galaxy/jobs/__init__.py", line
618, in finish
dataset.set_meta( overwrite = False )
File "/doolittle/Galaxy/galaxy_dist/lib/galaxy/model/__init__.py", line
874, in set_meta
return self.datatype.set_meta( self, **kwd )
line 179, in set_meta
raise Exception, "Error Setting BAM Metadata: %s" % stderr
Exception: Error Setting BAM Metadata: [bam_header_read] EOF marker is
absent. The input is probably truncated.
[bam_header_read] invalid BAM binary header (this is not a BAM file)
I ran bamtools on the unix command line to see if there was anything wrong
with the file(s) but nothing. I tried uploading different bam files from
other projects and get the same error.
I did do an update to the latest release yesterday...if that helps?
Thanks in advance,