Re: [galaxy-dev] Error when Installing package_galaxy_utils_1_0

Hi Leslie, I face the same problem: --- Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.38.tar.gz Extracting in /tmp/tmplcqzT1 Now working in /tmp/tmplcqzT1/distribute-0.6.38 Building a Distribute egg in /beegfs/common/galaxy/home/server/database/tmp/tmp-toolshed-mtdqsavtj/galaxy_sequence_utils-1.0.0 Traceback (most recent call last): File "setup.py", line 248, in <module> scripts = scripts, File "/software/Python/2.7.9/lib/python2.7/distutils/core.py", line 111, in setup _setup_distribution = dist = klass(attrs) File "/tmp/tmplcqzT1/distribute-0.6.38/setuptools/dist.py", line 225, in __init__ _Distribution.__init__(self,attrs) File "/software/Python/2.7.9/lib/python2.7/distutils/dist.py", line 287, in __init__ self.finalize_options() File "/tmp/tmplcqzT1/distribute-0.6.38/setuptools/dist.py", line 257, in finalize_options ep.require(installer=self.fetch_build_egg) File "/tmp/tmplcqzT1/distribute-0.6.38/pkg_resources.py", line 2027, in require working_set.resolve(self.dist.requires(self.extras),env,installer)) File "/tmp/tmplcqzT1/distribute-0.6.38/pkg_resources.py", line 2237, in requires dm = self._dep_map File "/tmp/tmplcqzT1/distribute-0.6.38/pkg_resources.py", line 2466, in _dep_map self.__dep_map = self._compute_dependencies() File "/tmp/tmplcqzT1/distribute-0.6.38/pkg_resources.py", line 2499, in _compute_dependencies common = frozenset(reqs_for_extra(None)) File "/tmp/tmplcqzT1/distribute-0.6.38/pkg_resources.py", line 2496, in reqs_for_extra if req.marker_fn(override={'extra':extra}): File "/tmp/tmplcqzT1/distribute-0.6.38/_markerlib/markers.py", line 109, in marker_fn return eval(compiled_marker, environment) File "<environment marker>", line 1, in <module> NameError: name 'sys_platform' is not defined /beegfs/common/galaxy/home/server/database/tmp/tmp-toolshed-mtdqsavtj/galaxy_sequence_utils-1.0.0/distribute-0.6.38-py2.7.egg Traceback (most recent call last): File "setup.py", line 9, in <module> use_setuptools() File "/beegfs/common/galaxy/home/server/database/tmp/tmp-toolshed-mtdqsavtj/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 152, in use_setuptools return _do_download(version, download_base, to_dir, download_delay) File "/beegfs/common/galaxy/home/server/database/tmp/tmp-toolshed-mtdqsavtj/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 132, in _do_download _build_egg(egg, tarball, to_dir) File "/beegfs/common/galaxy/home/server/database/tmp/tmp-toolshed-mtdqsavtj/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 123, in _build_egg raise IOError('Could not build the egg.') IOError: Could not build the egg. --- It might be an issue that distribute is not maintained any more (v0.6.38 is used, 0.7.3 was latest version in 2013, then migrated to setuptools). If you probably have updated setuptools (mine is version 18.3.1), it might cause the error. I tried to modify setup.py to use version 0.6.49 of distribute, but got the same error. Best, Sven On 10 September 2015 at 18:33, Leslie Herrera <laherrera(a)ucdavis.edu&gt; wrote: > Hello: > > My lab is currently in the process of setting Galaxy up on our server. I > have been installing the appropriate tools, but I am having difficulty > installing the package_galaxy_utils_1_0. The error message is below. If > this is something that is occuring on our end, would you please send > instuctions on how to fix it? If I have sent this email to wrong address > or you need more information, please let me know. Thank you very much for > your help. > > > Downloading > http://pypi.python.org/packages/source/d/distribute/distribute-0.6.38.tar.gz > Extracting in /tmp/tmp3dIIS_ > Now working in /tmp/tmp3dIIS_/distribute-0.6.38 > > Building a Distribute egg in /scratch/tmp-toolshed-mtdKjroZR/galaxy_sequence_utils-1.0.0 > Traceback (most recent call last): > File "setup.py", line 248, in <module> > scripts = scripts, > File "/usr/lib/python2.7/distutils/core.py", line 111, in setup > _setup_distribution = dist = klass(attrs) > > File "/tmp/tmp3dIIS_/distribute-0.6.38/setuptools/dist.py", line 225, in __init__ > _Distribution.__init__(self,attrs) > File "/usr/lib/python2.7/distutils/dist.py", line 287, in __init__ > self.finalize_options() > > File "/tmp/tmp3dIIS_/distribute-0.6.38/setuptools/dist.py", line 257, in finalize_options > ep.require(installer=self.fetch_build_egg) > > File "/tmp/tmp3dIIS_/distribute-0.6.38/pkg_resources.py", line 2027, in require > working_set.resolve(self.dist.requires(self.extras),env,installer)) > > File "/tmp/tmp3dIIS_/distribute-0.6.38/pkg_resources.py", line 2237, in requires > dm = self._dep_map > > File "/tmp/tmp3dIIS_/distribute-0.6.38/pkg_resources.py", line 2466, in _dep_map > self.__dep_map = self._compute_dependencies() > > File "/tmp/tmp3dIIS_/distribute-0.6.38/pkg_resources.py", line 2499, in _compute_dependencies > common = frozenset(reqs_for_extra(None)) > > File "/tmp/tmp3dIIS_/distribute-0.6.38/pkg_resources.py", line 2496, in reqs_for_extra > if req.marker_fn(override={'extra':extra}): > > File "/tmp/tmp3dIIS_/distribute-0.6.38/_markerlib/markers.py", line 109, in marker_fn > return eval(compiled_marker, environment) > File "<environment marker>", line 1, in <module> > NameError: name 'sys_platform' is not defined > > /scratch/tmp-toolshed-mtdKjroZR/galaxy_sequence_utils-1.0.0/distribute-0.6.38-py2.7.egg > Traceback (most recent call last): > File "setup.py", line 9, in <module> > use_setuptools() > > File "/scratch/tmp-toolshed-mtdKjroZR/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 152, in use_setuptools > return _do_download(version, download_base, to_dir, download_delay) > > File "/scratch/tmp-toolshed-mtdKjroZR/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 132, in _do_download > _build_egg(egg, tarball, to_dir) > > File "/scratch/tmp-toolshed-mtdKjroZR/galaxy_sequence_utils-1.0.0/distribute_setup.py", line 123, in _build_egg > raise IOError('Could not build the egg.') > IOError: Could not build the egg. > -- > Leslie A Herrera > Starr Lab Junior Specialist > MCB, 139 Briggs Hall > University of California, Davis > laherrera(a)ucdavis.edu > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. 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