Hello gents,
I would greatly appreciate some help configuring my new installation of galaxy 18.05.
I found most of the configuration I needed but I'm missing the following configuration in green. Here is my galaxy 17.05: [galaxy@esilbac3a ~]$ diff galaxy-17.05/config/galaxy.ini galaxy-17.05/config/galaxy.ini.sample 32c32 < port = 7112 ---
#port = 8080
37c37 < host = 0.0.0.0 ---
#host = 127.0.0.1
50,59d49 < # ---- HTTP PBS DRMAA HANDLER ----------------------------------------------- < < # Configuration of the pbs drmaa handler < < [server:handler0] < use = egg:Paste#http < port = 8088 < use_threadpool = True < threadpool_workers = 10 < 74c64 < prefix = /galaxy-prod ---
prefix = /galaxy
95c85 < filter-with = proxy-prefix ---
#filter-with = proxy-prefix
109c99 < database_connection = mysql://galaxy:qaz1wsx2@localhost/galaxy_db_prod2?unix_socket=/var/lib/mysql/mysql.sock ---
#database_connection = sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE
119c109 < database_engine_option_pool_recycle = 7200 ---
#database_engine_option_pool_recycle = -1
152c142 < file_path = /home/galaxy/galaxy-prod/database/files ---
#file_path = database/files
155c145 < new_file_path = /home/galaxy/galaxy-prod/database/tmp ---
#new_file_path = database/tmp
161c151 < tool_config_file = /home/galaxy/galaxy-prod/config/tool_conf.xml,/home/galaxy/galaxy-prod/config/shed_tool_conf.xml ---
#tool_config_file = config/tool_conf.xml,config/shed_tool_conf.xml
197c187 < tool_dependency_dir = /home/galaxy/galaxy-prod/tool-data/toolshed.dependency.dir ---
#tool_dependency_dir = database/dependencies
401c391 < job_working_directory = /home/galaxy/galaxy-prod/database/jobs_directory ---
#job_working_directory = database/jobs_directory
466c456 < smtp_server = smtp.umontreal.ca:25 ---
#smtp_server = None
475c465 < smtp_ssl = False ---
#smtp_ssl = False
486c476 < error_email_to = edgar.fernandez@umontreal.ca ---
#error_email_to = None
493c483 < email_from = Galaxy ESI Project rootbac@esi.umontreal.ca ---
#email_from = None
679c669 < apache_xsendfile = True ---
#apache_xsendfile = False
693c683 < upstream_gzip = False ---
#upstream_gzip = False
848c838 < debug = False ---
#debug = False
861c851 < use_interactive = False ---
use_interactive = True
989c979 < id_secret = 3s1G@l@xyPr0j3ct ---
#id_secret = USING THE DEFAULT IS NOT SECURE!
1038c1028 < admin_users = rootbac@esi.umontreal.ca ---
#admin_users = None
1041c1031 < require_login = True ---
#require_login = False
1049c1039 < allow_user_creation = False ---
#allow_user_creation = True
1052c1042 < allow_user_deletion = True ---
#allow_user_deletion = False
1055c1045 < allow_user_impersonation = True ---
#allow_user_impersonation = False
1060c1050 < allow_user_dataset_purge = True ---
#allow_user_dataset_purge = True
1066c1056 < new_user_dataset_access_role_default_private = True ---
#new_user_dataset_access_role_default_private = False
1200c1190 < enable_quotas = True ---
#enable_quotas = False
1234c1224 < job_config_file = /home/galaxy/galaxy-prod/config/job_conf.xml ---
#job_config_file = config/job_conf.xml
1292c1282 < retry_job_output_collection = 20 ---
#retry_job_output_collection = 0
1310c1300 < cleanup_job = onsuccess ---
#cleanup_job = always
Please help me find what I am missing.
Best regards,
Edgar Fernandez Administrateur Système (Linux) Technologies de l'Information Université de Montréal
PAVILLON ROGER-GAUDRY, bureau X-210 * Bur. : 1-514-343-6111 poste 16568