I'm suddenly getting this error today when I tried to restart Galaxy:
Starting galaxy... Some eggs are out of date, attempting to fetch... Warning: setuptools (a dependent egg of sqlalchemy-migrate) cannot be fetched Fetched http://eggs.galaxyproject.org/bioblend/bioblend-0.4.2-py2.7.egg One of Galaxy's managed eggs depends on something which is missing, this is almost certainly a bug in the egg distribution. Dependency "bioblend" requires "pyyaml" Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 37, in <module> c.resolve() # Only fetch eggs required by the config File "/ifs/user/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345, in resolve egg.resolve() File "/ifs/user/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 168, in resolve dists = pkg_resources.working_set.resolve( ( self.distribution.as_requirement(), ), env, self.fetch ) File "/ifs/user/galaxy/galaxy-dist/lib/pkg_resources.py", line 569, in resolve raise VersionConflict(dist,req) # XXX put more info here pkg_resources.VersionConflict: (bioblend 0.4.2 (/ifs/user/galaxy/galaxy-dist/eggs/bioblend-0.4.2-py2.7.egg), Requirement.parse('pyyaml'))
pyyaml is installed and I haven't updated anything that would cause a conflict. What do I do to fix this?
Thanks, Dori
********************************** Dori Sajdak Senior Systems Administrator State University of NY at Buffalo Center for Computational Research 701 Ellicott St Buffalo, NY 14203 Phone: (716) 881-8934 Fax: (716) 849-6656 Web: http://ccr.buffalo.edu **********************************