Hi folks,
Got a strange problem - it's hit me on all my self-install options today including using the Chef cookbook as well as the galaxy mecurial install method on Ubuntu 12.04 LTS
I'm trying to build a local galaxy that supports a few common extra tools (things like samtools etc.)
I can boot a fresh Ubuntu 12.04 LTS and follow the instructions at getgalaxy.org:
hg clone https://bitbucket.org/galaxy/galaxy-dist/ cd galaxy-dist hg update stable
sh ./run.sh
There are two strange things that don't quite match what I'm expecting to see from the docs ...
(1) The file "universe_wsgi.ini " no longer gets created in galaxy-dist/ after running "run.sh" for the first time. This is strange because I remember it working days ago but now on fresh server and fresh checkout the file does not get created and I have to manually create one in oder to set "host = 0.0.0.0"
(2) I can't even install simple tools like samtools from the standard tool sheds. The status page gets stuck at "installing dependencies" and if I navigate away I get a browser javascript error ("Initializing repository installation failed"
Any tips or tricks appreciated, thanks!
Regards, Chris