I'm sorry, I forgot to add the error log: /slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'setup_requires' warnings.warn(msg) /slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'install_requires' warnings.warn(msg) /slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'zip_safe' warnings.warn(msg) Warning: Assuming default configuration (numexpr/tests/{setup_tests,setup}.py was not found)Traceback (most recent call last): File "setup.py", line 227, in <module> setup_package() File "setup.py", line 223, in setup_package setup(**metadata) File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py", line 62, in run r = self.setuptools_run() File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/install.py", line 56, in setuptools_run self.do_egg_install() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/bdist_egg.py", line 151, in run self.run_command("egg_info") File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/slipstream/galaxy/production/dependencies/numpy/1.9/iuc/package_python_2_7_numpy_1_9/5f2b261ffc5b/lib/python/numpy/distutils/command/egg_info.py", line 11, in run _egg_info.run(self) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 180, in run self.find_sources() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 207, in find_sources mm.run() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 291, in run self.add_defaults() File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/egg_info.py", line 320, in add_defaults sdist.add_defaults(self) File "/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/site-packages/setuptools/command/sdist.py", line 124, in add_defaults if not self.distribution.include_package_data: AttributeError: NumpyDistribution instance has no attribute 'include_package_data' Thank you very much, Lucille Delisle, PhD PostDoc Duboule Lab Laboratory of Developmental Genomics EPFL SV ISREC UPDUB SV 2843 Station 19 CH-1015 Lausanne Tel : +41 21 693 97 08 ________________________________ De : galaxy-dev <galaxy-dev-bounces@lists.galaxyproject.org> de la part de Delisle Lucille <lucille.delisle@epfl.ch> Envoyé : lundi 24 juillet 2017 11:58 À : galaxy-dev@lists.galaxyproject.org Objet : [galaxy-dev] Creating a tool dependency packages Dear Galaxy list, I do not know if it is the right place to ask my question. I would like to create a tool dependency package for numexpr (a python library). I tried to do it taking examples from different tool dependency packages from iuc for example. I added my repository to the testtoolshed but when I tried to install it. The directory lib/python of my tool is empty. My repository is : package_python_2_7_numexpr_2_6_2<https://testtoolshed.g2.bx.psu.edu/repository/browse_repository?id=23c1f7fed262740a> The big difference I see between the one from iuc and mine is the url: For example, for pybigwig, the URL is : https://pypi.python.org/packages/source/p/pyBigWig/pyBigWig-0.1.9.tar.gz For my library numexpr I could not find such a url so I put the one I thought would be the good one: https://pypi.python.org/packages/31/43/7777ab9535c416faabd1865453389260fdad0... Thank you very much for your help, Lucille Delisle, PhD PostDoc Duboule Lab Laboratory of Developmental Genomics EPFL SV ISREC UPDUB SV 2843 Station 19 CH-1015 Lausanne Tel : +41 21 693 97 08