Dear all, I would like to use our built-in color-spaces indexes for BWA with Galaxy but I failed to do it. I added the following line in the "bwa_index_color.loc" file of the "tool-data" directory : hg19 hg19 hg19 my_path_to/hg19.fa but I don't see the reference hg19 appeared onto the browser... ("Map with BWA for SOLiD") Maybe I missed something here because there is a note about the original path for hg19 for workflow backwards compatibility (?), but I don't understand what it means.. For the BFAST indexes, It is OK. Thank you for your help Bruno -- Bruno Zeitouni, PhD Institut Curie - U900 INSERM - Mines ParisTech Equipe Bioinformatique Bâtiment de Biologie du Développement 26 rue d'ULM 75248 Paris Cedex 05 - FRANCE Tél : +33 1 56 24 69 31 Mail : bruno.zeitouni@curie.fr