Dear all,
I would like to use our built-in color-spaces indexes for BWA with Galaxy but I failed to do it.
I added the following line in the "bwa_index_color.loc" file of the "tool-data" directory :
hg19 hg19 hg19 my_path_to/hg19.fa
but I don't see the reference hg19 appeared onto the browser... ("Map with BWA for SOLiD")
Maybe I missed something here because there is a note about the original path for hg19 for workflow backwards compatibility (?), but I don't understand what it means..
For the BFAST indexes, It is OK.
Thank you for your help
Bruno