Hi Prakash,
You are on the thread so you should get direct replies. And you can review any of our mailing list postings by following the links here under "Archives": https://wiki.galaxyproject.org/MailingLists#The_lists
Subscribing is optional, for posting or viewing.
Thanks!
Jen Galaxy team
On 1/2/14 8:12 AM, Velayutham, Prakash (Prakash) wrote:
Hi,
I guess I would have to subscribe to that list to get status updates?
Thanks, Prakash
On Jan 2, 2014, at 11:09 AM, Jennifer Jackson <jen@bx.psu.edu mailto:jen@bx.psu.edu> wrote:
Hello Prakash, I am going to move this over to the galaxy-dev@bx.psu.edu mailing list where it will have greater visibility within our development community. Best, Jen Galaxy team https://wiki.galaxyproject.org/MailingLists#The_lists
On 1/2/14 7:27 AM, Velayutham, Prakash (Prakash) wrote:
Hi,
We have a SSO environment provided by Oracle Fusion products and for some reason, they don't like to send over HTTP_REMOTE_USER as a header variable to downstream servers. I have seen it before with other web sites I have integrated with Oracle Access Manager. Is there a way Galaxy can accept another HEADER variable than REMOTE_USER for its external authentication?
As an extension:
- With just enabling HTTP_REMOTE_USER as a header variable from an external authenticator, Galaxy works without any issues. I tried this with a default Apache/mod_ldap/mod_authnz_ldap setup.
- However, when I mix the Oracle gateways into the mix, things break down. o I made OAM send HTTP_AUTH_USER over to Galaxy. o I changed all instances of REMOTE_USER to AUTH_USER in the installed location of Galaxy in my server. o Authentication works fine, but I get issues with HISTORY part of Galaxy (below), when I access a workflow or basically any part of Galaxy that depends on HISTORY
Error Traceback:
View as: Interactive https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# | Text https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# | XML https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# (full) https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# ⇝ |AttributeError: 'NoneType' object has no attribute 'user'| URL: http://xxx.xxx.xxx/dataset/list?sort=-update_time&f-name=All&f-tags=... Module weberror.evalexception.middleware:*364* in |respond| <Mail Attachment.jpeg> https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# view https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# |>> https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#app_iter *=* self*.*application*(*environ*,* detect_start_response*)*| Module paste.recursive:*84* in |__call__| <Mail Attachment.jpeg> https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# view https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False# |>> https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#*return* self*.*application*(*environ*,* start_response*)*| Module galaxy.web.framework.middleware.remoteuser:*91* in |__call__|
<Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return* self*.*app*(* environ*,* start_response *)*| Module paste.httpexceptions:*633* in |__call__| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return* self*.*application*(*environ*,* start_response*)*| Module galaxy.web.framework.base:*132* in |__call__| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return* self*.*handle_request*(* environ*,* start_response *)*| Module galaxy.web.framework.base:*190* in |handle_request| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>body *=* method*(* trans*,* ****kwargs *)*| Module galaxy.web.framework:*98* in |decorator| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*return* func*(* self*,* trans*,* ***args*,* ****kwargs *)*| Module galaxy.webapps.galaxy.controllers.dataset:*555* in |list| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>status*,* message *=* self*.*_copy_datasets*(* trans*,* hda_ids*,* target_histories *)*| Module galaxy.webapps.galaxy.controllers.dataset:*1127* in |_copy_datasets| <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> |>> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>*if* user *!=* history*.*user*:*| *AttributeError: 'NoneType' object has no attribute 'user'*
Thanks, Prakash
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