Hello,
I have tried to couple our GALAXY-server (unified, running on a virtual server, ubuntu 12) with our big SGI Cluster-Server uv100 running PBSpro as job system (pbs_version = PBSPro_11.1.1.112253).
On the GALAXY-server I have installed
ii pbs-drmaa-dev 1.0.10-2 DRMAA for Torque/PBS Pro - devel ii pbs-drmaa1 1.0.10-2 DRMAA for Torque/PBS Pro - runtime
We have the GALAXY-sources installed very recently; job-creation is prepared, but no job is scheduled to our uv100.
Did you ever hear that the libdrmaa.so coming with this package is useful to couple to a PBSpro-server?
The DRMAA_LIBRARY_PATH has been set accordingly to /usr/lib/libdrmaa.so.1.0.10 .
we set default_cluster_job_runner = drmaa://uv100.awi.de/slong/
We also checked that the torque-system on the GALAXY-Server could successfully submit jobs by "qsub" on the PBSpro-server in the slong queue.
Best regards and many thanks in advance,
S. Frickenhaus
-- -- Prof. Dr. Stephan Frickenhaus Hochschule Bremerhaven An der Karlstadt 8 27568 Bremerhaven 0471-4823-525 0151-1741 1631
Alfred-Wegener-Institut f. Polar- u. Meeresforschung Am Handelshafen 12 27570 Bremerhaven stephan.frickenhaus@awi.de 0471-4831-1179 0151-1741 1631
-- Prof. Dr. Stephan Frickenhaus FB1 - Biotechnologie Hochschule Bremerhaven An der Karlstadt 8 27568 Bremerhaven 0471-4823-525 0151-1741 1631
Alfred-Wegener-Institut f. Polar- u. Meeresforschung Bioinformatik/Rechenzentrum Am Handelshafen 12 27570 Bremerhaven stephan.frickenhaus@awi.de 0471-4831-1179 0151-1741 1631