This is a known issue that we have plans to fix. You can follow our progress here:
Best, J.
On Jul 12, 2013, at 6:09 AM, Mathieu Bahin wrote:
Hi all,
We have a Galaxy instance that we are regularly keeping up to date following the Galaxy main, so we have the current version (fd4113962c32 commit).
For us, since a few updates (unfortunately, I don't know when it started), the "exit_code" tag is not working anymore. I made the simplest tool to confirm :
<tool id="tool_to_come" name="tool_to_come"> <description></description> <command interpreter="bash"> test.sh $input $output </command> <inputs> <param name="input" type="text" value="7" label="Param" /> </inputs> <outputs> <data name="output" format="fasta" label="Output" /> </outputs> <stdio> <exit_code range="12" level="fatal" description="Grave probleme !" /> </stdio> <help> **Tool documentation** </help> </tool> --------------- #!/bin/bash
set -e
if [ "$1" -ne 10 ]; then exit 12 else echo "Yeah !" > $2 fi
Anyway, it still doesn't work as it used to... Am I the only one to have the problem ? Can you help me ?
Cheers, Mathieu (Rennes - France) ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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