<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter *=* self*.*application*(*environ*,* start_response*)* Module paste.debug.prints:*98* in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> environ*,* self*.*app*)* Module paste.wsgilib:*539* in intercept_output
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*160* in __call__
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:*143* in __call__ body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.framework:*184* in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.web.controllers.admin_toolshed:*350* in browse_repositories
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* self*.*reselect_tool_panel_section*(* trans*,* ****kwd *)* Module galaxy.web.framework:*184* in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.web.controllers.admin_toolshed:*1352* in reselect_tool_panel_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> status*=*status *)* Module galaxy.web.framework:*746* in fill_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*757* in fill_template_mako
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* template*.*render*(* ****data *)* Module mako.template:*296* in render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs*)* Module mako.runtime:*718* in _exec_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*42* in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:*76* in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer*(*unicode*(*render_tool_dependency_section*(* install_tool_dependencies_check_box*,* *[* repo_info_dict *]* *)**)**)* Module _admin_tool_shed_repository_common_mako:*204* in render_render_tool_dependency_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision *)* Module posixpath:*67* in join
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> *elif* path *==* '' *or* path*.*endswith*(*'/'*)**:* *AttributeError: 'NoneType' object has no attribute 'endswith'*
Hello Franco, It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior? Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket. Greg Von Kuster On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ environ, self.app) Module paste.wsgilib:539 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section status=status ) Module galaxy.web.framework:746 in fill_template return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako return template.render( **data ) Module mako.template:296 in render return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template callable_(context, *args, **kwargs) Module _base_mako:42 in render_body __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section changeset_revision ) Module posixpath:67 in join elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Greg, Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is ³contra² from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps: Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed Thanks, Franco On 4/12/12 12:40 AM, "Greg Von Kuster" <greg@bx.psu.edu> wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... +reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) Module paste.wsgilib:539 in intercept_output
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) Module galaxy.web.framework:746 in fill_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) Module mako.template:296 in render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) Module _base_mako:42 in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) Module posixpath:67 in join
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith'
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.
Hi Franco, You're running a fairly old version of Galaxy - the main Galaxy tool shed tracks the galaxy-dist repository on bitbucket. You should upgrade to the latest dist release which went out today - the change set is 8286:f364d992270c. We'll take a look at reproducing this behavior first thing tomorrow with the dist revision to ensure there are no problems using your steps below. If we discover any issues we'll let you know. Thanks for the additional information. Greg Von Kuster On Dec 3, 2012, at 9:21 PM, Franco Caramia wrote:
Hi Greg,
Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is “contra” from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed
Thanks,
Franco
On 4/12/12 12:40 AM, "Greg Von Kuster" <greg@bx.psu.edu> wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) Module paste.wsgilib:539 in intercept_output <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) Module galaxy.web.framework:746 in fill_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) Module mako.template:296 in render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) Module _base_mako:42 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) Module posixpath:67 in join <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.
Hello Franco, The tool dependency installation fails due to BEDTools.v2.17.0.tar.gz extracting into a directory named bedtools-2.17.0, rather than BEDTools.v2.17.0. Also, you following tag is not optimal since it assumes a specific os platform. <action type="shell_command">cp bin/* $INSTALL_DIR/bin</action> You'll need to change your tool_dependency.xml definition to use the "target_file" option, and correct the above tag with something like the following: <?xml version="1.0"?> <tool_dependency> <package name="bedtools" version="2.17.0"> <install version="1.0"> <actions> <action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> <action type="shell_command">make clean</action> <action type="shell_command">make all</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools </readme> </package> </tool_dependency> Greg Von Kuster On Dec 3, 2012, at 9:21 PM, Franco Caramia wrote:
Hi Greg,
Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is “contra” from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed
Thanks,
Franco
On 4/12/12 12:40 AM, "Greg Von Kuster" <greg@bx.psu.edu> wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
<http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = self.application(environ, start_response) Module paste.debug.prints:98 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app) Module paste.wsgilib:539 in intercept_output <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ, replacement_start_response) Module paste.recursive:80 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module paste.httpexceptions:632 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ, start_response) Module galaxy.web.framework.base:160 in __call__ <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.reselect_tool_panel_section( trans, **kwd ) Module galaxy.web.framework:184 in decorator <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args, **kwargs ) Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> status=status ) Module galaxy.web.framework:746 in fill_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako( filename, **kwargs ) Module galaxy.web.framework:757 in fill_template_mako <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data ) Module mako.template:296 in render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self, self.callable_, args, data) Module mako.runtime:660 in _render <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_, data)) Module mako.runtime:692 in _render_context <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) Module mako.runtime:718 in _exec_template <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args, **kwargs) Module _base_mako:42 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body())) Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] ))) Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision ) Module posixpath:67 in join <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or path.endswith('/'): AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.
participants (2)
-
Franco Caramia -
Greg Von Kuster