URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... Module paste.exceptions.errormiddleware:*143* in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter *=* self*.*application*(*environ*,* start_response*)* Module paste.debug.prints:*98* in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# environ*,* self*.*app*)* Module paste.wsgilib:*539* in intercept_output
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter *=* application*(*environ*,* replacement_start_response*)* Module paste.recursive:*80* in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* self*.*application*(*environ*,* start_response*)* Module paste.httpexceptions:*632* in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*160* in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.framework:*184* in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.web.controllers.admin_toolshed:*350* in browse_repositories
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* self*.*reselect_tool_panel_section*(* trans*,* ****kwd *)* Module galaxy.web.framework:*184* in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.web.controllers.admin_toolshed:*1352* in reselect_tool_panel_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# status*=*status *)* Module galaxy.web.framework:*746* in fill_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* self*.*fill_template_mako*(* filename*,* ****kwargs *)* Module galaxy.web.framework:*757* in fill_template_mako
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* template*.*render*(* ****data *)* Module mako.template:*296* in render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *return* runtime*.*_render*(*self*,* self*.*callable_*,* args*,* data*)* Module mako.runtime:*660* in _render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# ****_kwargs_for_callable*(*callable_*,* data*)**)* Module mako.runtime:*692* in _render_context
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# _exec_template*(*inherit*,* lclcontext*,* args*=*args*,* kwargs*=*kwargs*)* Module mako.runtime:*718* in _exec_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# callable_*(*context*,* ***args*,* ****kwargs*)* Module _base_mako:*42* in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer*(*unicode*(*next*.*body*(**)**)**)* Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:*76* in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer*(*unicode*(*render_tool_dependency_section*(* install_tool_dependencies_check_box*,* *[* repo_info_dict *]* *)**)**)* Module _admin_tool_shed_repository_common_mako:*204* in render_render_tool_dependency_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# changeset_revision *)* Module posixpath:*67* in join
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# *elif* path *==* '' *or* path*.*endswith*(*'/'*)**:* *AttributeError: 'NoneType' object has no attribute 'endswith'*
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... Module paste.exceptions.errormiddleware:143 in __call__
app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
environ, self.app)
Module paste.wsgilib:539 in intercept_output
app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
body = method( trans, **kwargs )
Module galaxy.web.framework:184 in decorator
return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
return self.reselect_tool_panel_section( trans, **kwd )
Module galaxy.web.framework:184 in decorator
return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
status=status )
Module galaxy.web.framework:746 in fill_template
return self.fill_template_mako( filename, **kwargs )
Module galaxy.web.framework:757 in fill_template_mako
return template.render( **data )
Module mako.template:296 in render
return runtime._render(self, self.callable_, args, data)
Module mako.runtime:660 in _render
**_kwargs_for_callable(callable_, data))
Module mako.runtime:692 in _render_context
_exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
__M_writer(unicode(next.body()))
Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
__M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] )))
Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
changeset_revision )
Module posixpath:67 in join
elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Greg,
Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is ³contra² from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed
Thanks,
Franco
On 4/12/12 12:40 AM, "Greg Von Kuster" greg@bx.psu.edu wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... +reinstall&id=88ee2d7021e4dc1a Module paste.exceptions.errormiddleware:143 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# environ, self.app)
Module paste.wsgilib:539 in intercept_output
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# body = method( trans, **kwargs )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return self.reselect_tool_panel_section( trans, **kwd )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# status=status )
Module galaxy.web.framework:746 in fill_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return self.fill_template_mako( filename, **kwargs )
Module galaxy.web.framework:757 in fill_template_mako
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return template.render( **data )
Module mako.template:296 in render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# return runtime._render(self, self.callable_, args, data)
Module mako.runtime:660 in _render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# **_kwargs_for_callable(callable_, data))
Module mako.runtime:692 in _render_context
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(next.body()))
Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] )))
Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# changeset_revision )
Module posixpath:67 in join
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activ ate+or+reinstall&id=88ee2d7021e4dc1a# elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.
Hi Franco,
You're running a fairly old version of Galaxy - the main Galaxy tool shed tracks the galaxy-dist repository on bitbucket. You should upgrade to the latest dist release which went out today - the change set is 8286:f364d992270c. We'll take a look at reproducing this behavior first thing tomorrow with the dist revision to ensure there are no problems using your steps below. If we discover any issues we'll let you know.
Thanks for the additional information.
Greg Von Kuster
On Dec 3, 2012, at 9:21 PM, Franco Caramia wrote:
Hi Greg,
Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is “contra” from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed
Thanks,
Franco
On 4/12/12 12:40 AM, "Greg Von Kuster" greg@bx.psu.edu wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... Module paste.exceptions.errormiddleware:143 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# environ, self.app)
Module paste.wsgilib:539 in intercept_output
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# body = method( trans, **kwargs )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.reselect_tool_panel_section( trans, **kwd )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# status=status )
Module galaxy.web.framework:746 in fill_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.fill_template_mako( filename, **kwargs )
Module galaxy.web.framework:757 in fill_template_mako
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return template.render( **data )
Module mako.template:296 in render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return runtime._render(self, self.callable_, args, data)
Module mako.runtime:660 in _render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# **_kwargs_for_callable(callable_, data))
Module mako.runtime:692 in _render_context
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(next.body()))
Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] )))
Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# changeset_revision )
Module posixpath:67 in join
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# elif path == '' or path.endswith('/'):
AttributeError: 'NoneType' object has no attribute 'endswith' ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.
Hello Franco,
The tool dependency installation fails due to BEDTools.v2.17.0.tar.gz extracting into a directory named bedtools-2.17.0, rather than BEDTools.v2.17.0. Also, you following tag is not optimal since it assumes a specific os platform.
<action type="shell_command">cp bin/* $INSTALL_DIR/bin</action>
You'll need to change your tool_dependency.xml definition to use the "target_file" option, and correct the above tag with something like the following:
<?xml version="1.0"?> <tool_dependency> <package name="bedtools" version="2.17.0"> <install version="1.0"> <actions> <action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action> <action type="shell_command">make clean</action> <action type="shell_command">make all</action> <action type="move_directory_files"> <source_directory>bin</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> <readme> GCC version 4.1 or greater is recommended. 3.x versions will typically not compile BEDTools </readme> </package> </tool_dependency>
Greg Von Kuster
On Dec 3, 2012, at 9:21 PM, Franco Caramia wrote:
Hi Greg,
Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is “contra” from this repo: http://fcaramia@toolshed.g2.bx.psu.edu/repos/fcaramia/contra I own the repo and uploaded the tool_dependencies file Then the following steps:
Installing the tool from toolshed: Success Installing tool dependencies: Failed Deleting tool: Success Re-installing tool: Failed
Thanks,
Franco
On 4/12/12 12:40 AM, "Greg Von Kuster" greg@bx.psu.edu wrote:
Hello Franco,
It's impossible to help you with this issue and the issues you sent in your previous messages unless you provide more information. What version of Galaxy are you running? From what tool shed are you installing repositories. What repository are you installing? What are the precise steps you took to produce the behavior?
Keep in mind that the Galaxy test tool shed tracks the galaxy-central repository on bitbucket while the Galaxy main tool shed tracks the galaxy-dist repository on bitbucket.
Greg Von Kuster
On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote:
URL: http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o... Module paste.exceptions.errormiddleware:143 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# environ, self.app)
Module paste.wsgilib:539 in intercept_output
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# body = method( trans, **kwargs )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.reselect_tool_panel_section( trans, **kwd )
Module galaxy.web.framework:184 in decorator
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return func( self, trans, *args, **kwargs )
Module galaxy.web.controllers.admin_toolshed:1352 in reselect_tool_panel_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# status=status )
Module galaxy.web.framework:746 in fill_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return self.fill_template_mako( filename, **kwargs )
Module galaxy.web.framework:757 in fill_template_mako
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return template.render( **data )
Module mako.template:296 in render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# return runtime._render(self, self.callable_, args, data)
Module mako.runtime:660 in _render
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# **_kwargs_for_callable(callable_, data))
Module mako.runtime:692 in _render_context
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
Module mako.runtime:718 in _exec_template
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# callable_(context, *args, **kwargs)
Module _base_mako:42 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(next.body()))
Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in render_body
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# __M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] )))
Module _admin_tool_shed_repository_common_mako:204 in render_render_tool_dependency_section
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# changeset_revision )
Module posixpath:67 in join
http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a# elif path == '' or path.endswith('/'):
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Greg Von Kuster