Would it make sense to change these tools to conda dependencies?
r-getopt and r-getopt are already in conda-forge so should be an easy
On Mon, Jul 17, 2017 at 12:38 PM, Aysam Guerler <aysam.guerler(a)gmail.com> wrote:
There is no documentation for this but it is possible. You need to install R
and two R libraries (getopt, Matrix) in order to execute the charts
R-script. Once R is configured you can add the charts tool to the tools
directory and update your config/tool_conf.xml file accordingly before
restarting your local instance.
Having said this, can you specify in more detail why the tool installation
fails. Can you install other tools from the toolshed without problems?
I hope this helps.
On Mon, Jul 17, 2017 at 9:53 AM, Steven Shen <ishenweiyan(a)gmail.com> wrote:
> Hi all，
> Cytoscape, Bar diagram(NVD3), Horizontal(NVD3) , and other NVD3
> visualization tools are working good on my local galaxy except the
> jqplots, such as Box plot, Discrete Histogram, with error "This
> visualization requires the 'charts' tool. Please make sure it is
> It seems i need to install Charts first.
> Actually Charts could be installed from the Tool Shed through the Admin
> Interface, but it failed sometimes as the bad network. so is there any doc
> about installing Charts/tools through command line?
> Thank you.
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