Thank you Nicola,
it worked when I put retry_job_output_collection = 10, but only for some tools. For some
of them is still the same. Especially if I run it on a data collections.
And if I run the tool locally , not over the Slurm, it worked well.
I am not sure if the problem is with Slurm maybe or some Galaxy-Slurm configuration?
Von: Nicola Soranzo [mailto:email@example.com] Im Auftrag von Nicola Soranzo
Gesendet: Montag, 23. Jänner 2017 17:17
An: Durdevic, Marija;
Betreff: Re: [galaxy-dev] Resource temporarily unavailable
you can try to set
retry_job_output_collection = 3
in your config/galaxy.ini file and see if that helps.
On 23/01/17 09:47, Durdevic, Marija wrote:
From time to time I have issue on my Galaxy server. The problem is when job is done and
results has to be written to the database something happened. The error message is:
“/home/data/galaxy_database/files/024/dataset_24790.dat: Resource temporarily unavailable”
where “/home/data/galaxy_database/files/024/dataset_24790.dat” is path to the output file.
Although it produced reasonable output the job is shown as failed.
I am running galaxy over Slurm and we use NFS for connection with storage.
Do anyone have idea what can be possible reason for such error?
Thanks in advance.
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