Dear Jermy, Thanks for the Toolshed link, I installed it in the galaxy and tried running it by choosing "build backend database using cuffdiff output" and added additional plot as Heatmap. The Job was run successfully but i could'nt view the HTML page.. it shows as "Galaxy - cummeRbund Output " below the filename i could see like" format: html, database: hg19 [1] "heatmap failed: Error in sqliteExecStatement(con, statement, bind.data): RS-DBI driver: (error in statement: near \")\": syntax error)\n" " The database created by cummeRbund is no way related to the initially created database "postgreSQL" ?? Your suggestions are very much Apperiacted... Thank you Sridhar On Fri, Jul 12, 2013 at 6:29 PM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:

The toolshed has a wrapper for cummerbund:

http://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund

On Jul 12, 2013, at 12:03 AM, sridhar srinivasan wrote:

Dear Developers,

Could you please tell me the possibilities of using the R package cummeRband for visualization of RNA-seq data in galaxy??

Thanks Sridhar

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On Fri, Jul 12, 2013 at 6:29 PM, Jeremy Goecks <jeremy.goecks@emory.edu>wrote:

The toolshed has a wrapper for cummerbund:

http://toolshed.g2.bx.psu.edu/view/jjohnson/cummerbund

On Jul 12, 2013, at 12:03 AM, sridhar srinivasan wrote:

Dear Developers,

Could you please tell me the possibilities of using the R package cummeRband for visualization of RNA-seq data in galaxy??

Thanks Sridhar

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/