Dear all,
I would like to share a little tool for galaxy that I wrote.
The tool takes fasta files as input, keeps the header of each sequence but shuffles the sequence itself in a random order. Therefore the output file is a fasta file with sequences of the same base composition and length, but shuffled.
It is a very simple idea but gives me the opportunity to statistically evaluate certain analysis for ³real² libraries with the newly created ³in silico² libraries.
I hope some of you guys find this tool useful, comments are more than welcome!
Best, Felix
Dear all,
obviously I missed the already existing and much more sophisticated emboss shuffleseq¹ that is available via galaxy. So please ignore my last email to avoid redundancy!
Best, Felix
On 20.05.09 13:25, "Felix Muerdter" felix.muerdter@gmx.de wrote:
Dear all,
I would like to share a little tool for galaxy that I wrote.
The tool takes fasta files as input, keeps the header of each sequence but shuffles the sequence itself in a random order. Therefore the output file is a fasta file with sequences of the same base composition and length, but shuffled.
It is a very simple idea but gives me the opportunity to statistically evaluate certain analysis for ³real² libraries with the newly created ³in silico² libraries.
I hope some of you guys find this tool useful, comments are more than welcome!
Best, Felix
galaxy-dev mailing list galaxy-dev@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-dev
galaxy-dev@lists.galaxyproject.org
-
Felix Muerdter