Hi,
Actually I am not computer expert as well. I have just started to work in
this area. so I am not able to figure out how to solve this problem. I
request you to elaborate on what you meant in your previous mail.
Thanks in advance
As I wrote in my previous e-mail: "Please send all follow-up
with a cc
to the mailing list ("reply-all")."
In order to debug you situation you need to simulate a complete
commandline, the same Galaxy is doing.
Regards, Hans
On 01/23/2012 05:35 AM, Vidya .H.K wrote:
> Hi,
> Sorry for delayed reply. When I execute "macs_wrapper.py" on command line,
> I get the following error.
> python macs_wrapper.py
> File "<stdin>", line 1
> python macs_wrapper.py
> Thanks in advance
>> On 01/10/2012 06:31 AM, Vidya .H.K wrote:
>>> Hi,
>>> I think macs is exceutable with galaxy user.
>> what happens if you execute "macs_wrapper.py" on the command line?
Regards, Hans
>> PS: Please send all follow-up with a cc to the mailing list
>> ("reply-all").
>>>> On 01/09/2012 05:04 AM, Vidya .H.K wrote:
>>>>> Hi,
>>>>> I am new user to galaxy. I have installed galaxy on the Linux local
server
>>>>> for ChIP-seq analysis. While running MACS, an
error is flagged
>>>>> "An error occurred running this job: /bin/sh: macs: not
found"
.
>>>>> I have set the path for macs in /bin. But still
the error persists. It
>>>>> would be great if any one help me resolve this problem.
>>>> Hi Vidya
>>>> Is macs executable for the galaxy user (ie the user the galaxy
server
>>>> is
>>>> running as) ?
>>>> Regards, Hans
>>>>> Thanks in advance.
>>>>> Regards
>>>>> vidya
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