Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software: *apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9* *echo 'deb http://cran.r-project.org/bin/linux/ubuntu <http://cran.r-project.org/bin/linux/ubuntu> trusty/' >> /etc/apt/sources.list* *apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev* *apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev* *apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl* *apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev * *pip install distribute --upgrade* *pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2* *pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas* However, clicking the *visualize* icon no iPython and RStudio are visible. Galaxy is in my home folder installed */home/lorencm/galaxy.* What am I missing? Thank you in advance. Mic
Hi Mic, I don't believe GIEs are currently activated for anything other than plain text and tabular files. You can edit the $GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml (and rstudio/config/rstudio.xml) files to add a line like: Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test> and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users. Ciao, Eric On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking the *visualize* icon. <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>* What did I miss? Thank you in advance. Mic On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than plain text and tabular files. You can edit the $GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml (and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
Hi Mic, please check any other file than a VCF file. Try a txt file for example. Thanks, Bjoern Am 07.11.2015 um 00:54 schrieb Mic:
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking the *visualize* icon.
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>*
What did I miss?
Thank you in advance.
Mic
On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than plain text and tabular files. You can edit the $GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml (and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Bjoern, Thank you for your email. I tried the attached Annovar output which is tabular separated. Unfortunately, Rstudio and Ipython still did not show up. Thank you in advance. Best wishes, Mic On Sat, Nov 7, 2015 at 9:58 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Mic,
please check any other file than a VCF file. Try a txt file for example.
Thanks, Bjoern
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking
*visualize* icon.
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>*
What did I miss?
Thank you in advance.
Mic
On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than
Am 07.11.2015 um 00:54 schrieb Mic: the plain
text and tabular files. You can edit the
$GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml
(and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi all, Is there any log files which could show what did go wrong or is there any documentation how to install IEs? Thank you in advance. Mic On Mon, Nov 9, 2015 at 9:12 AM, Mic <mictadlo@gmail.com> wrote:
Hi Bjoern, Thank you for your email. I tried the attached Annovar output which is tabular separated. Unfortunately, Rstudio and Ipython still did not show up.
Thank you in advance.
Best wishes,
Mic
On Sat, Nov 7, 2015 at 9:58 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Mic,
please check any other file than a VCF file. Try a txt file for example.
Thanks, Bjoern
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking
*visualize* icon.
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>*
What did I miss?
Thank you in advance.
Mic
On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than
Am 07.11.2015 um 00:54 schrieb Mic: the plain
text and tabular files. You can edit the
$GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml
(and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Mic, have a look at this page. https://galaxy.readthedocs.org/en/master/admin/interactive_environments.html Which version of Galaxy you are using? Cheers, Bjoern Am 11.11.2015 um 11:05 schrieb Mic:
Hi all, Is there any log files which could show what did go wrong or is there any documentation how to install IEs?
Thank you in advance.
Mic
On Mon, Nov 9, 2015 at 9:12 AM, Mic <mictadlo@gmail.com> wrote:
Hi Bjoern, Thank you for your email. I tried the attached Annovar output which is tabular separated. Unfortunately, Rstudio and Ipython still did not show up.
Thank you in advance.
Best wishes,
Mic
On Sat, Nov 7, 2015 at 9:58 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Mic,
please check any other file than a VCF file. Try a txt file for example.
Thanks, Bjoern
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking
*visualize* icon.
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>*
What did I miss?
Thank you in advance.
Mic
On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than
Am 07.11.2015 um 00:54 schrieb Mic: the plain
text and tabular files. You can edit the
$GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml
(and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote:
Hello, Last week, I cloned Galaxy from Github. I uploaded a VCF file from my computer. I also installed the following additional software:
/apt-key adv --keyserver keyserver.ubuntu.com <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> /etc/apt/sources.list/ /apt-get -qq update && apt-get install --no-install-recommends -y libcurl4-openssl-dev libxml2-dev/ /apt-get install apt-transport-https python-dev libc-dev pandoc pkg-config liblzma-dev libbz2-dev libpcre3-dev/ /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base libreadline-dev / /pip install distribute --upgrade/ /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer ggplot mpld3 sympy rpy2/ /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython scikit-learn pandas/
However, clicking the /visualize/ icon no iPython and RStudio are visible. Galaxy is in my home folder installed //home/lorencm/galaxy./
What am I missing?
Thank you in advance.
Mic
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi all, Thank you for the link. I did not know about the link. @Bjoern: Few month back I saw somewhere a website where it was possible to download a VM with Galaxy. By any chance, do you remember the link? Thank you in advance. Mic On Wed, Nov 11, 2015 at 10:29 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Mic,
have a look at this page.
https://galaxy.readthedocs.org/en/master/admin/interactive_environments.html
Which version of Galaxy you are using? Cheers, Bjoern
Am 11.11.2015 um 11:05 schrieb Mic:
Hi all, Is there any log files which could show what did go wrong or is there any documentation how to install IEs?
Thank you in advance.
Mic
On Mon, Nov 9, 2015 at 9:12 AM, Mic <mictadlo@gmail.com> wrote:
Hi Bjoern, Thank you for your email. I tried the attached Annovar output which is tabular separated. Unfortunately, Rstudio and Ipython still did not show up.
Thank you in advance.
Best wishes,
Mic
On Sat, Nov 7, 2015 at 9:58 AM, Björn Grüning < bjoern.gruening@gmail.com> wrote:
Hi Mic,
please check any other file than a VCF file. Try a txt file for example.
Thanks, Bjoern
Hi Eric, I added your line to ipython.xml and rstudio.xml and restarted Galaxy, but still Rstudio and Ipython do not appear on my test.vcf file by clicking
*visualize* icon.
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test> <test type="isinstance" test_attr="datatype" result_type="datatype">data.Text</test> *<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>*
What did I miss?
Thank you in advance.
Mic
On Sat, Nov 7, 2015 at 1:13 AM, Eric Rasche <esr@tamu.edu> wrote:
Hi Mic,
I don't believe GIEs are currently activated for anything other than
Am 07.11.2015 um 00:54 schrieb Mic: the plain
text and tabular files. You can edit the
$GALAXY_ROOT/config/plugins/interactive_environments/ipython/config/ipython.xml
(and rstudio/config/rstudio.xml) files to add a line like:
Konsole output <test type="isinstance" test_attr="datatype" result_type="datatype">tabular.VCF</test>
and that /should/ let you open VCF files. (I haven't tested that exact datatype but I believe that should work). GIEs have been somewhat experimental so far, so we haven't felt the need to expand which datatypes they apply to lest we overwhelm/surprise users.
Ciao, Eric
On 11/06/2015 02:56 AM, Mic wrote: > Hello, > Last week, I cloned Galaxy from Github. I uploaded a VCF file from my > computer. I also installed the following additional software: > > /apt-key adv --keyserver keyserver.ubuntu.com > <http://keyserver.ubuntu.com> --recv-keys E084DAB9/ > /echo 'deb http://cran.r-project.org/bin/linux/ubuntu trusty/' >> > /etc/apt/sources.list/ > /apt-get -qq update && apt-get install --no-install-recommends -y > libcurl4-openssl-dev libxml2-dev/ > /apt-get install apt-transport-https python-dev libc-dev pandoc > pkg-config liblzma-dev libbz2-dev libpcre3-dev/ > /apt-get install libblas-dev liblapack-dev gfortran libzmq3-dev curl/ > /apt-get install libfreetype6-dev libpng-dev net-tools procps r-base > libreadline-dev / > /pip install distribute --upgrade/ > /pip install scipy sklearn-pandas bioblend matplotlib patsy pysam khmer > ggplot mpld3 sympy rpy2/ > /pip install pyzmq ipython==2.4 jinja2 tornado pygments numpy biopython > scikit-learn pandas/ > > However, clicking the /visualize/ icon no iPython and RStudio are > visible. Galaxy is in my home folder installed //home/lorencm/galaxy./ > > What am I missing? > > Thank you in advance. > > Mic > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
-- Eric Rasche Programmer II
Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
-
Björn Grüning -
Eric Rasche -
Mic