Hi, On the left tool list panel of Galaxy website. On the top, there is a "options" button, when I click it, it shows a "Search Tools". How can I get it on my own local Galaxy server? On my local one, when I click "Options" button, the "Search Tools" button does not show up. Thanks
On the left tool list panel of Galaxy website. On the top, there is a "options" button, when I click it, it shows a "Search Tools". How can I get it on my own local Galaxy server? On my local one, when I click "Options" button, the "Search Tools" button does not show up.
Tool search is compatible with Python 2.5 and greater, so it could be a problem with your Python version. If that's not the problem, perhaps there are some Javascript errors on the panel that are causing problems (make sure to look for errors in the panel/frame, not the page). Please let us know if you find any Javascript errors. Also, please reply-all so that this conversation (and others) are shared with and archived to the list. Thanks, J.
Hi, My python version is 2.4.3. That could be the problem. BTW, where is "panel/frame"? I did not find it. Thanks
On the left tool list panel of Galaxy website. On the top, there is a "options" button, when I click it, it shows a "Search Tools". How can I get it on my own local Galaxy server? On my local one, when I click "Options" button, the "Search Tools" button does not show up.
Tool search is compatible with Python 2.5 and greater, so it could be a problem with your Python version. If that's not the problem, perhaps there are some Javascript errors on the panel that are causing problems (make sure to look for errors in the panel/frame, not the page). Please let us know if you find any Javascript errors.
Also, please reply-all so that this conversation (and others) are shared with and archived to the list.
Thanks, J.
My python version is 2.4.3. That could be the problem.
Yes, that's the problem. You'll need to upgrade to Python 2.5 or higher to get tool search.
BTW, where is "panel/frame"? I did not find it.
The main Galaxy interface has three iframe HTML objects: the tools menu, the history, and the workspace (middle frame). In Galaxy, we refer to these as panels; because each iframe has different source code and Javascript, you often have to look in a particular frame to find Javascript issues. That said, I'm confident that your problem is your Python version. Thanks, J.
Jeremy, I have observed the same. My python version is newer 2.6.4 (r264:75706, Dec 7 2009) so that should be ok. There are however javascript errors on win7x64 ie8. I paste the error details below (my translation from Dutch). These errors are there onload and the options link does not work at all. Any help appreciated. Alex Error details webpage Useragent: Mozilla/4.0 (compatible; MSIE 8.0; Windows NT 6.1; WOW64; Trident/4.0; SLCC2; .NET CLR 2.0.50727; .NET CLR 3.5.30729; .NET CLR 3.0.30729; Media Center PC 6.0; .NET4.0C; InfoPath.3) Timestamp: Thu, 21 Oct 2010 06:28:46 UTC Message: Id, charset or number expected Line: 444 Char: 9 Code: 0 URI: http://galaxy01:8080/ Van: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] Namens Jeremy Goecks Verzonden: woensdag 20 oktober 2010 22:58 Aan: zhe@lanl.gov CC: galaxy-dev@bx.psu.edu Onderwerp: Re: [galaxy-dev] Search tools button My python version is 2.4.3. That could be the problem. Yes, that's the problem. You'll need to upgrade to Python 2.5 or higher to get tool search. BTW, where is "panel/frame"? I did not find it. The main Galaxy interface has three iframe HTML objects: the tools menu, the history, and the workspace (middle frame). In Galaxy, we refer to these as panels; because each iframe has different source code and Javascript, you often have to look in a particular frame to find Javascript issues. That said, I'm confident that your problem is your Python version. Thanks, J.
Hi Galaxy devs, On Oct 20, 2010, at 10:57 PM, Jeremy Goecks wrote:
My python version is 2.4.3. That could be the problem.
Yes, that's the problem. You'll need to upgrade to Python 2.5 or higher to get tool search.
We had the same problem and didn't know what caused it. Good to know it's the Python version. On the get Galaxy site (http://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy) it says: "Currently supported Python versions are 2.4, 2.5, and 2.6." Maybe it's time to drop 2.4 from that list.... Cheers, Pi
BTW, where is "panel/frame"? I did not find it.
The main Galaxy interface has three iframe HTML objects: the tools menu, the history, and the workspace (middle frame). In Galaxy, we refer to these as panels; because each iframe has different source code and Javascript, you often have to look in a particular frame to find Javascript issues.
That said, I'm confident that your problem is your Python version.
Thanks, J. _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
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participants (4)
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Bossers, Alex -
Jeremy Goecks -
Pieter Neerincx -
Zhe Chen