The vision I had was a cron script admins could install which would send
thr past day/week's collectl/memory/parameter/dataset size logs to GRT.
Again, the GRT side stalled when I hit issues with collectl locally. If you
have time/energy to work on that we should chat :-) Otherwise I plan to
find time for it before GCC, minus the collectl stuff, just capturing
runtimes as a start.
14. mar. 2016 1.09 p.m. skrev "Peter van Heusden" <pvh(a)sanbi.ac.za>:
I'm having a look at the GRT. We're collecting metrics on our local Galaxy
server, I'm just trying to understand how you envision these metrics
getting into the GRT?
On 22 February 2016 at 07:31, Eric Rasche <esr(a)tamu.edu> wrote:
> Hi peter,
> I've been working on this in the past but got caught up in other
> projects. There's work for a server-side component here (maybe 50% done),
> the client side stuff could all be done through collectl but I was having
> issues actually collecting collectl data that had put the project on hold
> I'd be very, very interested in finishing this project up.
> On 02/21/2016 11:13 PM, Peter van Heusden wrote:
> Hi there
> We're researching the resource (CPU time and memory) requirements for RNA
> STAR at the moment. Specifically, we'd like to build up a database of input
> size to resource usage so that we can use this to feed a dynamic
> destination mapper (currently our STAR configuration uses a thumbsuck for
> RAM and CPU requirements that is not optimal but works in many cases).
> Has anyone collected these metrics before? And more generally, is anyone
> collecting metrics for a range of bioinformatics tools? A database like
> this could be very useful!
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> Eric Rasche
> Programmer II
> Center for Phage Technology
> Rm 312A, BioBio
> Texas A&M University
> College Station, TX 77843
> Not responding quickly enough?