9:36 a.m.
Hi,
is it possible to change from bitbucket to git? So I would like
future-update my galaxy from git instead from bitbucket.
Cheers Jochen
9:41 a.m.
Hi Jochen,
I recently did this. Instructions are here:
https://wiki.galaxyproject.org/Develop/SourceCode
This has worked for me:
(~/galaxy-dist is my production galaxy dir)
cd ~
git clone https://github.com/galaxyproject/galaxy.git
cd galaxy
git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae
cd ~/galaxy-dist
hg update 17115
mv .hg .hg_backup
cp -R ~/galaxy/.git .
git pull (at this point I got a merge error!)
so I did:
git diff > local_changes.diff
cat local_changes.diff |patch -p1 -R
git pull
git checkout release_15.05
Best,
Marius
On 21 July 2015 at 11:36, Jochen Bick <jochen.bick(a)usys.ethz.ch> wrote:
Hi,
is it possible to change from bitbucket to git? So I would like
future-update my galaxy from git instead from bitbucket.
Cheers Jochen
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10:45 a.m.
Thanks Marius,
it does not look like it's working for me. There are to many changes in
git diff...
the git pull and cat local_changes.diff |patch -p1 -R gives me an
endless list of differences.
Cheers Jochen
On 21.07.2015 11:41, Marius van den Beek wrote:
Hi Jochen,
I recently did this. Instructions are here:
https://wiki.galaxyproject.org/Develop/SourceCode
This has worked for me:
(~/galaxy-dist is my production galaxy dir)
cd ~
git clone https://github.com/galaxyproject/galaxy.git
cd galaxy
git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae
cd ~/galaxy-dist
hg update 17115
mv .hg .hg_backup
cp -R ~/galaxy/.git .
git pull (at this point I got a merge error!)
so I did:
git diff > local_changes.diff
cat local_changes.diff |patch -p1 -R
git pull
git checkout release_15.05
Best,
Marius
On 21 July 2015 at 11:36, Jochen Bick <jochen.bick(a)usys.ethz.ch> wrote:
> Hi,
>
> is it possible to change from bitbucket to git? So I would like
> future-update my galaxy from git instead from bitbucket.
>
> Cheers Jochen
11:27 a.m.
Hi Jochen,
I recently took a probably more labour intensive approach.
# backup!
# mv prev-installation to somewhere else
# git clone to old-location
# git checkout -b master origin/master
# and copy over every config, tool xml, tool dependency directory,
tool-data loc files from the prev-installation to the new git one
# add your own code changes if you have any that you want to keep
# ./run.sh or manage_db.sh upgrade
# check log and probably copy some more missing files
The upside for me was that I could finally remove all the junk that our
installation has been collecting for the last couple of year.
Cheers,
Jelle
On Tue, Jul 21, 2015 at 12:45 PM, Jochen Bick <jochen.bick(a)usys.ethz.ch>
wrote:
Thanks Marius,
it does not look like it's working for me. There are to many changes in
git diff...
the git pull and cat local_changes.diff |patch -p1 -R gives me an
endless list of differences.
Cheers Jochen
On 21.07.2015 11:41, Marius van den Beek wrote:
> Hi Jochen,
>
> I recently did this. Instructions are here:
> https://wiki.galaxyproject.org/Develop/SourceCode
>
> This has worked for me:
> (~/galaxy-dist is my production galaxy dir)
> cd ~
> git clone https://github.com/galaxyproject/galaxy.git
> cd galaxy
> git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae
> cd ~/galaxy-dist
> hg update 17115
> mv .hg .hg_backup
> cp -R ~/galaxy/.git .
> git pull (at this point I got a merge error!)
> so I did:
> git diff > local_changes.diff
> cat local_changes.diff |patch -p1 -R
> git pull
> git checkout release_15.05
>
> Best,
> Marius
>
> On 21 July 2015 at 11:36, Jochen Bick <jochen.bick(a)usys.ethz.ch> wrote:
>
>> Hi,
>>
>> is it possible to change from bitbucket to git? So I would like
>> future-update my galaxy from git instead from bitbucket.
>>
>> Cheers Jochen
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
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3 comments
3 participants
participants (3)
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Jelle Scholtalbers -
Jochen Bick -
Marius van den Beek