Hi Jochen,

I recently did this. Instructions are here: https://wiki.galaxyproject.org/Develop/SourceCode

This has worked for me: (~/galaxy-dist is my production galaxy dir) cd ~ git clone https://github.com/galaxyproject/galaxy.git cd galaxy git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae cd ~/galaxy-dist hg update 17115 mv .hg .hg_backup cp -R ~/galaxy/.git . git pull (at this point I got a merge error!) so I did: git diff > local_changes.diff cat local_changes.diff |patch -p1 -R git pull git checkout release_15.05

Best, Marius

On 21 July 2015 at 11:36, Jochen Bick jochen.bick@usys.ethz.ch wrote:

Hi,

is it possible to change from bitbucket to git? So I would like future-update my galaxy from git instead from bitbucket.

Cheers Jochen ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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Hi Jochen,

I recently took a probably more labour intensive approach.

# backup! # mv prev-installation to somewhere else # git clone to old-location # git checkout -b master origin/master # and copy over every config, tool xml, tool dependency directory, tool-data loc files from the prev-installation to the new git one # add your own code changes if you have any that you want to keep # ./run.sh or manage_db.sh upgrade # check log and probably copy some more missing files

The upside for me was that I could finally remove all the junk that our installation has been collecting for the last couple of year.

Cheers, Jelle

On Tue, Jul 21, 2015 at 12:45 PM, Jochen Bick jochen.bick@usys.ethz.ch wrote:

Thanks Marius,

it does not look like it's working for me. There are to many changes in git diff...

the git pull and cat local_changes.diff |patch -p1 -R gives me an endless list of differences.

Cheers Jochen

On 21.07.2015 11:41, Marius van den Beek wrote:

...

Hi Jochen,

I recently did this. Instructions are here: https://wiki.galaxyproject.org/Develop/SourceCode

This has worked for me: (~/galaxy-dist is my production galaxy dir) cd ~ git clone https://github.com/galaxyproject/galaxy.git cd galaxy git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae cd ~/galaxy-dist hg update 17115 mv .hg .hg_backup cp -R ~/galaxy/.git . git pull (at this point I got a merge error!) so I did: git diff > local_changes.diff cat local_changes.diff |patch -p1 -R git pull git checkout release_15.05

Best, Marius

On 21 July 2015 at 11:36, Jochen Bick jochen.bick@usys.ethz.ch wrote:

...

Hi,

is it possible to change from bitbucket to git? So I would like future-update my galaxy from git instead from bitbucket.

Cheers Jochen

---

Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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