galaxy database has two tables missing
Hi guys, Recently we have discovered there is a bug in the database dump utility. And we had used the same utility to migrate the galaxy mysql database once. That resulted the on the current galaxy database, two tables are missing: genome_index_tool_data tool_dependency I am wondering if there is a safe way to repair the database so that these two tables get added back? Regards, Derrick
ar.. Just saw the news brief, will that be possible that these two tables are added as part of the Tool Shed and Admin Genome Indexing update?? Regards, D On Thu, Jul 26, 2012 at 12:18 PM, Derrick Lin <klin938@gmail.com> wrote:
Hi guys,
Recently we have discovered there is a bug in the database dump utility. And we had used the same utility to migrate the galaxy mysql database once.
That resulted the on the current galaxy database, two tables are missing:
genome_index_tool_data tool_dependency
I am wondering if there is a safe way to repair the database so that these two tables get added back?
Regards, Derrick
Both of these tables were introduced in the most recent Galaxy release. On Jul 25, 2012, at 10:32 PM, Derrick Lin wrote:
ar..
Just saw the news brief, will that be possible that these two tables are added as part of the Tool Shed and Admin Genome Indexing update??
Regards, D
On Thu, Jul 26, 2012 at 12:18 PM, Derrick Lin <klin938@gmail.com> wrote: Hi guys,
Recently we have discovered there is a bug in the database dump utility. And we had used the same utility to migrate the galaxy mysql database once.
That resulted the on the current galaxy database, two tables are missing:
genome_index_tool_data tool_dependency
I am wondering if there is a safe way to repair the database so that these two tables get added back?
Regards, Derrick
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participants (2)
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Derrick Lin
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Greg Von Kuster