Mira doesn’t work on Galaxy. This is the log message I receive. Tool: Assemble with MIRA v3.4 Name: MIRA log Created: Fri Aug 22 00:24:38 2014 (UTC) Filesize: 0 bytes Dbkey: ? Format: txt Galaxy Tool Version: 0.0.10 Tool Version: None Tool Standard Output: stdout<http://130.56.251.91/datasets/d5f55b83db1f410a/stdout> Tool Standard Error: stderr<http://130.56.251.91/datasets/d5f55b83db1f410a/stderr> Tool Exit Code: None API ID: d5f55b83db1f410a Full Path: /mnt/galaxy/files/000/dataset_326.dat Input Parameter Value Note for rerun Assembly method De novo Assembly type Genome Assembly quality grade Accurate Backbones/reference chromosomes? false Sanger/Capillary reads? false 454 reads? false Solexa/Illumina reads? false Ion Torrent reads? true Ion Torrent reads file 10: R_2011_10_19_14_30_56_user_SN1-36_Auto_SN1-36_38.fastq Inheritance Chain MIRA log Also I can’t install Mira 4. This is the message I receive. Any suggestions. Thanks. Marija Tauschek -- Dr Marija Tauschek/Atanaskovic Robins-Browne Lab Dept Microbiology & Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Victoria 3010, Australia Tel: +61 3 8344 9927 Email: matan@unimelb.edu.au Internal Server Error Galaxy was unable to successfully complete your request URL: http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236 Module galaxy.web.framework.middleware.error:149 in __call__

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<http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> app_iter = self.application(environ, sr_checker) Module paste.recursive:84 in __call__ <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> body = method( trans, **kwargs ) Module galaxy.web.framework:369 in decorator <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.admin_toolshed:983 in prepare_for_install <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> includes_tool_dependencies ) Module tool_shed.util.common_install_util:97 in get_dependencies_for_repository <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> repository = suc.get_repository_for_dependency_relationship( trans.app, tool_shed_url, name, repository_owner, changeset_revision ) Module tool_shed.util.shed_util_common:1036 in get_repository_for_dependency_relationship <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> ( name, owner, changeset_revision ) ) Module tool_shed.util.shed_util_common:1867 in url_join <http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#> parts.append( arg.strip( '/' ) ) AttributeError: 'NoneType' object has no attribute 'strip' extra data<http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#extra_data>

full traceback<http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#full_traceback> text version<http://130.56.251.91/admin_toolshed/prepare_for_install?tool_shed_url=https://testtoolshed.g2.bx.psu.edu/&repository_ids=4dd4d179ddfb3445&changeset_revisions=aeb3e35f8236#text_version> This may be an intermittent problem due to load or other unpredictable factors, reloading the page may address the problem.