Hi, the command that you suggested not working, the same output is presented. I tested with the following commands: *sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml --galaxy_root=/home/leobiscassi/programs/galaxy* *sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml* What is the influence of xUnit file in the process? I did the question because the warning message showing "*Cannot locate xUnit report option for tests - update Galaxy for more detailed breakdown*". P.S.: My Galaxy instance is the latest stable version. Best regards, On Thu, Mar 3, 2016 at 2:53 AM Björn Grüning <bjoern.gruening@gmail.com> wrote:

Hi,

maybe I'm mistaken something, its way to early here ... but you need to specify a path to the tool you want to test.

For example:

planemo test /foo/bar/foo.xml

or to a directory full of tools.

planemo test /foo/bar

Hope this helps, Bjoern

Am 03.03.2016 um 04:48 schrieb Léo Biscassi:

...

Hi Folks, I tried follow this tutorial [1], but I have problems in execute the command "planemo t --galaxy_root=/home/leobiscassi/programs/galaxy" for perform functional tests, any suggestion? Bellow some images about this problem:

imagem1.jpg *Figure 1: *Command

imagem2.jpg *Figure 2:* Error

imagem3.jpg *Figure 3: *Galaxy Path

Planemo's version is 0.23.0.

[1] https://planemo.readthedocs.org/en/latest/writing_standalone.html

P.S: The command is utilized for same tool presented in tutorial.

Att. -- *Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter - https://twitter.com/leobiscassi

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

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Hi Gildas, thanks for the reply. I had renamed galaxy.ini.sample file to galaxy.ini and performed my configurations to the server. In fact, I created the file galaxy.ini.sample and command works fine! Thanks a lot! Best regards, On Thu, Mar 3, 2016 at 5:46 AM Gildas Le Corguillé < lecorguille@sb-roscoff.fr> wrote:

Hi,

Do you still have the config/galaxy.ini.sample file unchanged ?

We observed this message when some .sample are missing or were modified.

Gildas

----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------

Le 3 mars 2016 à 07:31, Léo Biscassi <leo.biscassi@gmail.com> a écrit :

Hi, the command that you suggested not working, the same output is presented. I tested with the following commands:

*sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml --galaxy_root=/home/leobiscassi/programs/galaxy*

*sudo planemo test /home/leobiscassi/programs/galaxy/tools/planemo-tutorial/seqtk_seq.xml*

What is the influence of xUnit file in the process? I did the question because the warning message showing "*Cannot locate xUnit report option for tests - update Galaxy for more detailed breakdown*".

P.S.: My Galaxy instance is the latest stable version.

Best regards,

On Thu, Mar 3, 2016 at 2:53 AM Björn Grüning <bjoern.gruening@gmail.com> wrote:

...

Hi,

maybe I'm mistaken something, its way to early here ... but you need to specify a path to the tool you want to test.

For example:

planemo test /foo/bar/foo.xml

or to a directory full of tools.

planemo test /foo/bar

Hope this helps, Bjoern

Am 03.03.2016 um 04:48 schrieb Léo Biscassi:

...

Hi Folks, I tried follow this tutorial [1], but I have problems in execute the command "planemo t --galaxy_root=/home/leobiscassi/programs/galaxy" for perform functional tests, any suggestion? Bellow some images about this problem:

imagem1.jpg *Figure 1: *Command

imagem2.jpg *Figure 2:* Error

imagem3.jpg *Figure 3: *Galaxy Path

Planemo's version is 0.23.0.

[1] https://planemo.readthedocs.org/en/latest/writing_standalone.html

P.S: The command is utilized for same tool presented in tutorial.

Att. -- *Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter - https://twitter.com/leobiscassi

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

-- *Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter - https://twitter.com/leobiscassi ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

-- *Léo Biscassi* Facebook - https://pt-br.facebook.com/lbiscassi Linkedin - https://br.linkedin.com/in/leobiscassi Skype - biscassi.leo Twitter - https://twitter.com/leobiscassi