Re: [galaxy-user] Tophat for Illumina - built-in dog genome mislabelled

Hi, I minor annoyance that I had found with the current implementation of "Tophat for Illumina (version 1.5.0)" in the public usegalaxy.org site: When you submit sequences for alignment, the dropdown list of available genomes gives 2 dog genome choices -- BUT both are labeled the same -- "Dog(Canis lupus familiaris): canFam2". After trial and error I found that the second (lower on the list) choice is actually "Dog(Canis lupus familiaris): canFam3.1". Hopefully this can be corrected at some point -- maybe when the next release comes out from the Broad. Michael *Michael H. Court, BVSc, PhD, Diplomate ACVA* *Professor and William R. Jones Endowed Chair* *Individualized Medicine Program* *Pharmacogenomics Laboratory* *Department of Veterinary Clinical Sciences* *College of Veterinary Medicine, Washington State University* *100 Grimes Way, Pullman, WA 99164-6610*** *Office: 509-335-0817 Cell: 774-287-7082 Fax: 509-335-0880* michael.court(a)vetmed.wsu.edu <mailto:michael.court@vetmed.wsu.edu> www.vetmed.wsu.edu <http://www.vetmed.wsu.edu/>** ** ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/