Hi Yuval,
You should be able to retrieve RNA co-ordinates using the interface to UCSC genome browser under 'Get data' section on Galaxy. For information on which tracks and tables to choose, please refer these links which contain answers to this topic from UCSC mailing list: http://www.soe.ucsc.edu/pipermail/genome/2007-August/014299.html http://www.soe.ucsc.edu/pipermail/genome/2007-May/013491.html http://www.soe.ucsc.edu/pipermail/genome/2006-April/010436.html
Thanks for using Galaxy, Guru Galaxy team.
On Jan 27, 2010, at 11:59 AM, Kluger, Yuval wrote:
Hi,
I would appreciate any suggestion how one can use Galaxy to obtain coordinates of human and mouse of all known tRNAs. Similarly how one can do that for other types such as miRNAs and other small RNAs .
Thanks,
Yuval
This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email.
galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Guruprasad Ananda Graduate Student Bioinformatics and Genomics The Pennsylvania State University