Hi Keith,
A SAMTools update is being discussed internally. I can't comment yet about when exactly this would be implemented, but when the time comes the details would be made public in the Galaxy Announcements and News Brief: http://galaxyproject.org/wiki/News
There are also a few bitbucket tickets related to particular SAMTools modules, with this one being specific for mpileup: http://bitbucket.org/galaxy/galaxy-central/issue/524
Best,
Jen Galaxy team
On 9/7/11 7:09 AM, Keith Funkhouser wrote:
Hi all,
It seems that the more recent "mpileup" tool that is a part of SAMtools offer better indel prediction than the current "pileup" tool.
I've found the following thread http://gmod.827538.n3.nabble.com/samtools-mpileup-update-td3277940.html ...and the following issue https://bitbucket.org/galaxy/galaxy-central/issue/524/implement-wrappers-for... ...regarding the topic.
Is there community demand for this new tool implementation in Galaxy, or is it already in the works?
Thanks, Keith Funkhouser
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