Hi all,
It seems that the more recent "mpileup" tool that is a part of SAMtools offer better indel prediction than the current "pileup" tool.
I've found the following thread http://gmod.827538.n3.nabble.com/samtools-mpileup-update-td3277940.html ...and the following issue https://bitbucket.org/galaxy/galaxy-central/issue/524/implement-wrappers-for... ...regarding the topic.
Is there community demand for this new tool implementation in Galaxy, or is it already in the works?
Thanks, Keith Funkhouser
galaxy-user@lists.galaxyproject.org