Im trying to map RNA-seq data to a reference genome in Galaxy (Main instance) using both
Bowtie 1 and Bowtie 2. Im currently using publicly available data
) which is not available in
FASTQ format - only the raw sequences with the read count. Is there a way to set the input
data for bowtie to raw, as is possible using the terminal? Or is there a way to convert a
raw sequence to FASTQ (not sure if this would work, but it might be possible if I assigned
accession numbers to each sequence and made all the quality scores identical)?
Thanks very much
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