Hi Claudio,
did you installed Augustus with the ToolShed? The env variable $AUGUSTUS_SCRIPT_PATH need to be set and point to the augustus wrapper folder containing the extract_features.py script.
Hope that helps! Bjoern
Hello,
I am trying to use the genome Annotation tool Augustus on my locally installed copy of Galaxy. After loading the data file, all analyses stop and deliver the following:
error an error occurred with this dataset: /bin/sh:1:augustus: not found python: can't open file: '/extract_features.py': [Errno 2] No such file or directory
Python is installed on my system (Ubuntu 12.04, Python 2.7.3)
It must be something very basic I'm missing, but more basic are my linux skills…
Thanks a lot
Claudio
~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^ Claudio Slamovits, Canadian Institute for Advanced Research Department of Biochemistry and Molecular Biology Dalhousie University 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada
Lab Webpage: http://slamo.biochem.dal.ca Lab: (902) 494 7894 Office: (902) 494 8825 Fax: (902) 494 1355 ^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~
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