Hi Claudio,
did you installed Augustus with the ToolShed?
The env variable $AUGUSTUS_SCRIPT_PATH need to be set and point to the
augustus wrapper folder containing the extract_features.py script.
Hope that helps!
Bjoern
Hello,
I am trying to use the genome Annotation tool Augustus on my locally
installed copy of Galaxy. After loading the data file, all analyses
stop and deliver the following:
error
an error occurred with this dataset: /bin/sh:1:augustus: not found
python: can't open file: '/extract_features.py': [Errno 2] No such
file or directory
Python is installed on my system (Ubuntu 12.04, Python 2.7.3)
It must be something very basic I'm missing, but more basic are my
linux skills…
Thanks a lot
Claudio
~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^
Claudio Slamovits,
Canadian Institute for Advanced Research
Department of Biochemistry and Molecular Biology
Dalhousie University
5850 College Street, Halifax, Nova Scotia
B3H 4R2, Canada
Lab Webpage:
http://slamo.biochem.dal.ca
Lab: (902) 494 7894
Office: (902) 494 8825
Fax: (902) 494 1355
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"Reality is what it is, not what you want it to be."
- Frank Zappa
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