We identified our local sequence file in tool-data/faseq.loc. However, that file never shows up as an option under the "database/ build" pulldown (when we "pencil" edit a dataset). What additional configuration is necessary to have our local files show up in the database/build pulldowns? regards, David Goodstein
UCB Center for Integrative Genomics
On 24 Jun 2008, at 16:47, Rochak Neupane wrote:
---------- Forwarded message ---------- From: Greg Von Kuster <ghv2@psu.edu> Date: Wed, Jun 18, 2008 at 1:06 PM Subject: Re: [galaxy-user] local sequence storage To: Rochak Neupane <rneupane@berkeley.edu> Cc: galaxy-user@bx.psu.edu
Hello Rochak,
Yes, this is certainly possible. The Galaxy distribution is configured to look in the ~/tool-data directory for files which point to your locally cached sequences. See the "tool_data_path" setting in the Galaxy config ( universe_wsgi.ini ). This directory contains sample ".loc.sample" files that are included in the distribution to provide information about how to point the ".loc" versions of the same files to your own locally cached sequences. The comments at the beginning of each of these files provides this information.
Greg Von Kuster Galaxy Development Team
Rochak Neupane wrote:
Hello,
I recently started using galaxy. I installed a local copy of galaxy, and am wondering how I can add our own sequences so that galaxy understands them when fetching. So instead of fetching from PSU it'll look at a local source. Is this doable? If so, how can I configure this?
Thanks, Rochak _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user