In the cufflink site, they have annotation from ucsc,ncbi & ensemble. not sure which
one to download and then load into galaxy?
Sent from my iPhone
On Aug 30, 2011, at 5:52 PM, "vasu punj" <punjv(a)yahoo.com> wrote:
If using Ensembl make sure it is properly formatted.
--- On Tue, 8/30/11, Peng, Tao <tpeng(a)fhcrc.org> wrote:
From: Peng, Tao <tpeng(a)fhcrc.org>
Subject: [galaxy-user] annotation file for cufflinks
To: "Jennifer Jackson" <jen(a)bx.psu.edu>, "galaxy-user"
Date: Tuesday, August 30, 2011, 1:52 PM
Hi jen and galaxy users, when I try to use cufflinks in GALAXY and select "use
reference annotation", I am NOT sure how to get the annotation file in GTF format for
I was trying to down-load the annotation file from Illumina donated package in Cufflink
website, I am NOT sure this is the right way to go for?
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