[galaxy-user] Fetch sequence and alignments: extract blastz alignments

Is it possible to get hg18 alignments to panTro2 on the server?

the latest are at : http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsPanTro2/

please do NOT use the ones currently in /depot/data1/cache/human/hg18/align/panTro2/axtNet/

as they were run using an incorrect substitution matrix.

Thanks a lot! - Erika

********************************************************** E.M. Kvikstad Academic Computing Fellow IGDP Genetics Center for Comparative Genomics and Bioinformatics The Pennsylvania State University 208 Mueller Lab University Park, PA 16802 (814) 863-2185 kvik@bx.psu.edu