Hello Vikash,
Their are two Arabidopsis thaliana genomes indexed for use with some tools on the public Galaxy instance at http://usegalaxy.org - and full indexes will be published in the near term.
Arabidopsis_thaliana_TAIR10 Arabidopsis_thaliana_TAIR9
If you are using a local Galaxy, the indexes currently available can be created by you, or our version can be obtained from the rsync server. Instructions are here: https://wiki.galaxyproject.org/Admin/Data%20Integration https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
If using the public Galaxy, you can use any genome with most tools as a custom reference genome right now, without waiting for us to index them. Instructions are here: https://wiki.galaxyproject.org/Support#Custom_reference_genome
Hopefully this helps,
Jen Galaxy team
On 1/26/14 11:03 PM, Vikash Yadav wrote:
Dear Sir/Maam
I am using Galaxy for analysis of NGS data. I want to map the NGS data, but the genome of my interest (Arabidopsis thaliana) is not listed. So what i can do to mapp my data using galaxy.
Waiting for your kind response
Thanks & Regards Vikash -- */ Vikash Kumar Yadav/* */Senior Research Fellow,/**/ /**/Plant Molecular Biology Lab,/**/ /**/National Botanical Research Institute,/**/ /**/Mobile- 090 261 190 92/*
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