Dear Galaxy team,
I just discovered your tool and is fantastic!. I want to reannotate the porcine affymetrix microarray. So I wanted to perform the following steps:
1. Run blat/blast to the porcine genome SGSC sscrofa9.2/susScr2 with the sequences of all probes on the array (which i have in a csv file) 2. Get genes 3. Do the same with human genome
I can load my file and the entire pig genome but i do not know how to perform the "alignment" Is it possible to perform blat/blast (or any other alignment tool similar) through Galaxy?
Thanks very much in advance,
mailto:lnonell@imim.esLara Nonell Microarray Analysis Service Scientific and Technical Services IMIM-Hospital del Mar
Barcelona Biomedical Research Park (office 166) Doctor Aiguader, 88 | 08003 Barcelona Tel.+34 933 160 577 | Fax +34 933 160 410 lnonell@imim.esmailto:lnonell@imim.es www.imim.eshttp://www.imim.es/