Are you reporting a bug for each failed Cuffdiff run? That's the easiest way for the
Galaxy team to help you out. One thing to keep in mind is that, for now, spaces are not
allowed in condition names. We'll address this problem soon.
On Oct 22, 2013, at 5:42 AM, Elwood Linney <ellinney(a)gmail.com> wrote:
After successfully using RNAseq software in Galaxy online for about 10 different
datasets to just get gene expression differences between replicates from control versus
exposed zebrafish embryos, I am having no luck getting cuffdiff to work with the
I had this problem with histories developed before the move and histories developed after
I have had this problem using an order cuffmerge gtf file that worked in the past in
Cuffdiff, with a new cuffmerge file developed from cufflinks of the files and by just
using a ref file gtf from UCSC.
I don't know if this is just some interface problem with a different version of the
software that was included with the move, or a reference genome that does not interface
with Cuffdiff. It has happened with about 5 different histories.
Is anyone else having this problem? And found a solution?
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