Hello All,
One more problem when running analysis on local galaxy install. I am trying to run fastqc on a fastq file I just imported. I have fastqc in ~/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/FastQC
I am getting the following error
## odpath=None: No output found in None. Output for the run was:
/bin/sh: /root/Programs/Galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc: Permission denied
My guess is the output directory path is not set. If my guess is correct, the question is where do I set the path?
If my guess is wrong, any help interpreting the error greatly appreciated.
Aarti
Aarti Desai, Ph.D | Domain Specialist - Life Sciences aarti_desai@persistent.co.inmailto:aarti_desai@persistent.co.in | Cell: +91-9673009492 | Tel: + 91-20-67036348 Persistent Systems Ltd. | Partners in Innovation | www.persistentsys.comhttp://www.persistentsys.com/
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